Wall clock time and date at job start Mon Mar 30 2020 02:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46917 * 2 1 4 4 C 1.50699 * 109.47089 * 120.00013 * 2 1 3 5 5 H 1.07997 * 119.99888 * 120.00465 * 4 2 1 6 6 C 1.37879 * 119.99801 * 299.99944 * 4 2 1 7 7 N 1.31508 * 120.00333 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99498 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46936 * 90.00302 * 8 6 4 10 10 H 1.48502 * 109.47031 * 210.00173 * 8 6 4 11 11 H 1.48501 * 109.47062 * 330.00189 * 8 6 4 12 12 N 1.46502 * 109.46872 * 240.00414 * 2 1 3 13 13 C 1.46494 * 119.99855 * 299.99418 * 12 2 1 14 14 C 1.38536 * 120.00071 * 120.00169 * 12 2 1 15 15 C 1.39665 * 120.53428 * 184.99670 * 14 12 2 16 16 C 1.38070 * 118.33726 * 179.72345 * 15 14 12 17 17 N 1.32584 * 119.19734 * 359.97438 * 16 15 14 18 18 C 1.31752 * 121.01332 * 0.02562 * 17 16 15 19 19 N 1.31777 * 121.83501 * 359.97438 * 18 17 16 20 20 H 1.09000 * 109.47641 * 299.99745 * 1 2 3 21 21 H 1.09007 * 109.47407 * 60.00050 * 1 2 3 22 22 H 1.09002 * 109.46917 * 179.97438 * 1 2 3 23 23 H 0.96996 * 120.00295 * 179.97438 * 7 6 4 24 24 H 1.09005 * 109.47344 * 270.00772 * 13 12 2 25 25 H 1.08997 * 109.47273 * 30.00487 * 13 12 2 26 26 H 1.08999 * 109.47113 * 150.00842 * 13 12 2 27 27 H 1.07997 * 120.83114 * 359.74285 * 15 14 12 28 28 H 1.07995 * 120.40294 * 180.02562 * 16 15 14 29 29 H 1.08008 * 119.08313 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5440 4.4118 10 1 1.3444 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7121 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.8147 -0.0173 -2.1081 15 6 3.2006 -0.6307 -3.3021 16 6 3.9899 0.0841 -4.1809 17 7 4.3529 1.3198 -3.8659 18 6 3.9723 1.8708 -2.7312 19 7 3.2192 1.2256 -1.8635 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.7081 1.1608 3.4844 24 1 2.4157 -2.7376 -0.9717 25 1 0.6905 -2.3001 -0.9847 26 1 1.6238 -2.2851 -2.5002 27 1 2.8890 -1.6388 -3.5323 28 1 4.3072 -0.3576 -5.1139 29 1 4.2864 2.8793 -2.5060 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095858.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:32 Heat of formation + Delta-G solvation = 40.932864 kcal Electronic energy + Delta-G solvation = -13405.748139 eV Core-core repulsion = 11135.718720 eV Total energy + Delta-G solvation = -2270.029419 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.62782 -38.40542 -35.15267 -33.89334 -32.51528 -30.56527 -27.75350 -27.27002 -25.00442 -23.99074 -21.71861 -18.67467 -18.51091 -17.96682 -16.65623 -16.19634 -15.93155 -15.63785 -15.25724 -14.66986 -14.40882 -14.15396 -13.46620 -13.02278 -12.96742 -12.72797 -12.54433 -12.29323 -12.10973 -11.82031 -11.35883 -11.09819 -10.69750 -10.53867 -9.88982 -8.63219 -8.11106 -6.29720 0.31377 0.62069 1.40025 1.41307 1.50765 2.20781 2.44049 3.12897 3.16155 3.52797 3.65972 3.98208 4.34667 4.42459 4.69087 4.74531 4.76607 4.83702 4.92073 5.00777 5.09003 5.36133 5.56038 5.72800 5.85395 6.06309 6.18888 6.50514 6.74413 6.83916 7.39537 7.55937 8.89570 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.043483 B = 0.009161 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.773032 B = 3055.740605 C = 3174.230662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.031 0.969 4 C -0.538 4.538 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.960 3.040 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.266 1.266 12 N -0.586 5.586 13 C 0.096 3.904 14 C 0.414 3.586 15 C -0.306 4.306 16 C 0.171 3.829 17 N -0.591 5.591 18 C 0.323 3.677 19 N -0.614 5.614 20 H 0.069 0.931 21 H 0.018 0.982 22 H 0.042 0.958 23 H 0.264 0.736 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.165 0.835 28 H 0.200 0.800 29 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -4.773 -9.820 11.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.049 0.951 4 C -0.577 4.577 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.785 3.215 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.191 1.191 12 N -0.294 5.294 13 C -0.046 4.046 14 C 0.170 3.830 15 C -0.335 4.335 16 C 0.010 3.990 17 N -0.312 5.312 18 C 0.033 3.967 19 N -0.339 5.339 20 H 0.088 0.912 21 H 0.037 0.963 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.182 0.818 28 H 0.217 0.783 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.349 -3.916 -9.313 10.372 hybrid contribution -0.104 -0.901 1.063 1.397 sum 2.244 -4.817 -8.250 9.813 Atomic orbital electron populations 1.21921 0.97724 0.99772 0.99858 1.18612 0.91007 0.92895 0.80829 0.95101 1.21574 1.31710 1.12897 0.91506 0.93000 1.25640 0.95095 0.95650 1.01695 1.69995 1.37196 1.23797 1.24357 0.85533 0.77889 0.79069 0.78961 1.20801 1.20468 1.19092 1.47140 1.48778 1.11882 1.21635 1.21729 1.01060 0.79702 1.02128 1.19142 0.86942 0.88691 0.88206 1.22387 1.09805 1.05235 0.96054 1.23412 0.88566 0.88645 0.98397 1.68442 1.28262 1.13842 1.20613 1.25028 0.87516 0.99726 0.84430 1.68065 1.19410 1.10123 1.36316 0.91250 0.96302 0.93921 0.92641 0.93301 0.90938 0.88959 0.81760 0.78283 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.95 71.98 0.64 -5.80 15 2 C 0.27 13.74 2.67 44.24 0.12 13.86 15 3 H 0.03 1.83 6.85 -2.39 -0.02 1.81 15 4 C -0.54 -29.31 8.37 25.60 0.21 -29.10 15 5 H 0.05 2.81 7.65 -2.91 -0.02 2.79 15 6 C 0.02 1.03 5.30 84.66 0.45 1.48 15 7 N -0.91 -52.11 11.32 21.45 0.24 -51.87 15 8 Si 0.96 43.18 29.54 68.60 2.03 45.20 15 9 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 10 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 12 N -0.59 -24.89 2.86 -708.31 -2.02 -26.91 15 13 C 0.10 3.14 9.54 127.77 1.22 4.36 15 14 C 0.41 16.71 7.39 133.18 0.98 17.70 15 15 C -0.31 -9.31 9.33 22.57 0.21 -9.09 15 16 C 0.17 4.65 11.29 84.54 0.95 5.61 15 17 N -0.59 -19.01 10.43 -200.33 -2.09 -21.10 15 18 C 0.32 11.46 12.28 180.90 2.22 13.68 15 19 N -0.61 -26.52 9.00 -197.60 -1.78 -28.30 15 20 H 0.07 3.70 6.07 -2.39 -0.01 3.68 15 21 H 0.02 0.82 8.14 -2.38 -0.02 0.80 15 22 H 0.04 1.88 6.66 -2.39 -0.02 1.86 15 23 H 0.26 14.29 8.31 -92.71 -0.77 13.52 15 24 H 0.05 1.58 8.14 -2.38 -0.02 1.56 15 25 H 0.07 2.39 6.43 -2.39 -0.02 2.37 15 26 H 0.09 2.26 6.05 -2.39 -0.01 2.25 15 27 H 0.16 3.84 6.16 -2.91 -0.02 3.82 15 28 H 0.20 3.47 8.06 -2.91 -0.02 3.44 15 29 H 0.21 5.97 8.06 -2.91 -0.02 5.95 15 Total: -1.00 -65.25 246.17 4.54 -60.71 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 1.15 Total: 9.57 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: 7.02 Total: 12.69 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -5.65 Total: -128.18 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -65.25 4.54 -60.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095858.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.646 kcal (2) G-P(sol) polarization free energy of solvation -65.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds