Wall clock time and date at job start Mon Mar 30 2020 02:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46926 * 2 1 4 4 C 1.50706 * 109.46653 * 240.00482 * 2 1 3 5 5 H 1.07999 * 119.99537 * 240.00123 * 4 2 1 6 6 C 1.37870 * 120.00146 * 59.72128 * 4 2 1 7 7 N 1.31514 * 120.00152 * 0.27339 * 6 4 2 8 8 Si 1.86808 * 119.99885 * 180.27451 * 6 4 2 9 9 H 1.48496 * 109.47114 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46667 * 119.99904 * 8 6 4 11 11 H 1.48490 * 109.47045 * 240.00169 * 8 6 4 12 12 N 1.46491 * 109.47466 * 120.00320 * 2 1 3 13 13 C 1.46505 * 120.00172 * 65.60892 * 12 2 1 14 14 C 1.38534 * 120.00266 * 245.61068 * 12 2 1 15 15 C 1.39661 * 120.52902 * 10.69090 * 14 12 2 16 16 C 1.38083 * 118.33401 * 179.77982 * 15 14 12 17 17 N 1.32575 * 119.19607 * 0.50256 * 16 15 14 18 18 C 1.31758 * 121.01970 * 359.73851 * 17 16 15 19 19 N 1.31783 * 121.82644 * 0.02562 * 18 17 16 20 20 H 1.09004 * 109.46465 * 299.99487 * 1 2 3 21 21 H 1.08996 * 109.47286 * 59.99575 * 1 2 3 22 22 H 1.09001 * 109.46926 * 180.02562 * 1 2 3 23 23 H 0.96998 * 120.00148 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.47348 * 89.99613 * 13 12 2 25 25 H 1.09006 * 109.47348 * 210.00293 * 13 12 2 26 26 H 1.09007 * 109.46941 * 329.99903 * 13 12 2 27 27 H 1.07995 * 120.83578 * 0.02562 * 15 14 12 28 28 H 1.07998 * 120.40347 * 180.24227 * 16 15 14 29 29 H 1.07995 * 119.08851 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6944 -0.2426 -2.4827 7 7 0.9383 0.8267 -2.6034 8 14 2.3107 -1.1277 -4.0081 9 1 3.1363 -2.2939 -3.6040 10 1 1.1522 -1.5961 -4.8105 11 1 3.1329 -0.1969 -4.8221 12 7 2.0185 -0.6906 1.1960 13 6 1.7687 -2.1240 1.3676 14 6 2.7165 0.0116 2.1650 15 6 2.7711 1.4067 2.1288 16 6 3.4758 2.0608 3.1199 17 7 4.0812 1.3490 4.0603 18 6 4.0151 0.0331 4.0640 19 7 3.3502 -0.6319 3.1408 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 0.7009 1.1560 -3.4843 24 1 2.5891 -2.6910 0.9277 25 1 1.6957 -2.3555 2.4303 26 1 0.8353 -2.3920 0.8725 27 1 2.2714 1.9602 1.3477 28 1 3.5365 3.1391 3.1265 29 1 4.5205 -0.5158 4.8448 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:34 Heat of formation + Delta-G solvation = 40.138138 kcal Electronic energy + Delta-G solvation = -13410.373294 eV Core-core repulsion = 11140.309413 eV Total energy + Delta-G solvation = -2270.063881 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.66085 -38.47853 -35.22236 -33.80735 -32.32059 -30.98611 -27.56839 -27.32533 -25.06915 -24.04732 -21.77897 -18.68388 -18.59244 -17.92757 -16.76676 -16.21646 -15.98982 -15.67885 -15.17301 -14.66776 -14.39807 -14.14318 -13.48978 -13.06489 -12.97319 -12.77319 -12.56373 -12.34565 -12.15669 -11.78937 -11.49863 -11.09309 -10.75592 -10.54086 -10.03739 -8.66698 -8.16916 -6.34819 0.27801 0.54311 1.39031 1.42512 1.52438 2.14413 2.42202 3.08399 3.10853 3.52748 3.59919 3.94356 4.39408 4.45835 4.67083 4.68671 4.77673 4.85195 4.89925 4.99619 5.03949 5.33485 5.56868 5.63334 5.74256 5.96747 6.11056 6.50088 6.66777 6.78793 7.34628 7.46912 8.83948 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.044711 B = 0.009008 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.096809 B = 3107.578988 C = 3198.930819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.271 3.729 3 H 0.035 0.965 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.026 3.974 7 N -0.910 5.910 8 Si 0.959 3.041 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.280 1.280 12 N -0.584 5.584 13 C 0.114 3.886 14 C 0.420 3.580 15 C -0.309 4.309 16 C 0.174 3.826 17 N -0.588 5.588 18 C 0.325 3.675 19 N -0.604 5.604 20 H 0.026 0.974 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.267 0.733 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.136 0.864 28 H 0.192 0.808 29 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -0.680 7.349 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.053 0.947 4 C -0.582 4.582 5 H 0.070 0.930 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.206 1.206 12 N -0.293 5.293 13 C -0.029 4.029 14 C 0.176 3.824 15 C -0.338 4.338 16 C 0.014 3.986 17 N -0.309 5.309 18 C 0.036 3.964 19 N -0.330 5.330 20 H 0.045 0.955 21 H 0.094 0.906 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.154 0.846 28 H 0.209 0.791 29 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.974 -1.168 7.710 8.044 hybrid contribution -0.259 0.047 -1.761 1.780 sum 1.715 -1.122 5.949 6.292 Atomic orbital electron populations 1.21955 0.97282 0.99931 1.00465 1.18811 0.91617 0.92495 0.80146 0.94737 1.21549 1.32045 1.13341 0.91245 0.93003 1.25553 0.94879 0.95609 1.01441 1.69955 1.36728 1.23505 1.24625 0.85493 0.78221 0.78534 0.79295 1.19814 1.20107 1.20605 1.47138 1.54032 1.09326 1.18797 1.21358 1.00418 0.80006 1.01151 1.18990 0.86828 0.89383 0.87189 1.22392 1.11251 0.94199 1.05943 1.23245 0.87119 1.01619 0.86646 1.68442 1.25463 1.09018 1.27947 1.25243 0.89896 0.87911 0.93374 1.68048 1.15849 1.41953 1.07166 0.95501 0.90624 0.94467 0.92350 0.94422 0.90985 0.91363 0.84649 0.79126 0.76190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 9.04 71.98 0.65 -5.60 15 2 C 0.27 12.99 2.50 44.25 0.11 13.10 15 3 H 0.03 1.79 5.58 -2.39 -0.01 1.77 15 4 C -0.54 -28.42 8.31 25.60 0.21 -28.20 15 5 H 0.05 2.77 7.33 -2.91 -0.02 2.75 15 6 C 0.03 1.34 5.30 84.65 0.45 1.79 15 7 N -0.91 -48.61 11.31 21.44 0.24 -48.37 15 8 Si 0.96 41.71 29.54 68.60 2.03 43.74 15 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 10 H -0.28 -11.64 7.11 99.48 0.71 -10.93 15 11 H -0.28 -12.04 7.11 99.48 0.71 -11.33 15 12 N -0.58 -25.17 2.86 -708.28 -2.02 -27.19 15 13 C 0.11 4.31 9.41 127.77 1.20 5.51 15 14 C 0.42 17.12 7.34 133.18 0.98 18.09 15 15 C -0.31 -11.57 9.30 22.58 0.21 -11.36 15 16 C 0.17 5.43 11.29 84.54 0.95 6.39 15 17 N -0.59 -18.71 10.43 -200.33 -2.09 -20.80 15 18 C 0.33 10.14 12.28 180.90 2.22 12.36 15 19 N -0.60 -22.43 9.42 -197.61 -1.86 -24.29 15 20 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.08 3.77 6.06 -2.39 -0.01 3.75 15 22 H 0.04 1.61 6.89 -2.39 -0.02 1.59 15 23 H 0.27 13.54 8.31 -92.71 -0.77 12.77 15 24 H 0.04 1.45 8.00 -2.39 -0.02 1.43 15 25 H 0.07 2.48 7.59 -2.38 -0.02 2.46 15 26 H 0.07 2.52 6.74 -2.38 -0.02 2.50 15 27 H 0.14 5.23 6.10 -2.91 -0.02 5.21 15 28 H 0.19 4.42 8.06 -2.91 -0.02 4.39 15 29 H 0.22 4.90 8.06 -2.91 -0.02 4.87 15 Total: -1.00 -58.09 246.49 4.43 -53.66 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.15 Total: 11.18 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.99 Total: 12.08 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.73 Total: -120.65 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -58.09 4.43 -53.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.796 kcal (2) G-P(sol) polarization free energy of solvation -58.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds