Wall clock time and date at job start Mon Mar 30 2020 02:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34850 * 126.29507 * 2 1 4 4 N 1.36348 * 108.21820 * 179.75785 * 3 2 1 5 5 C 1.46500 * 125.63258 * 180.21917 * 4 3 2 6 6 C 1.52997 * 109.47458 * 265.02653 * 5 4 3 7 7 C 1.50697 * 109.47568 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99637 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00001 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99856 * 180.02562 * 9 7 6 11 11 Si 1.86792 * 120.00278 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47540 * 89.99655 * 11 9 7 13 13 H 1.48502 * 109.47433 * 209.99971 * 11 9 7 14 14 H 1.48507 * 109.47241 * 329.99671 * 11 9 7 15 15 C 1.36341 * 108.73078 * 0.24359 * 4 3 2 16 16 C 1.50690 * 125.89174 * 180.02562 * 15 4 3 17 17 C 1.34858 * 108.21705 * 359.97438 * 15 4 3 18 18 C 1.50695 * 126.29153 * 180.02562 * 17 15 4 19 19 H 1.08994 * 109.47213 * 90.02385 * 1 2 3 20 20 H 1.08997 * 109.47297 * 210.03036 * 1 2 3 21 21 H 1.09005 * 109.46640 * 330.02584 * 1 2 3 22 22 H 1.08002 * 125.89234 * 0.02698 * 3 2 1 23 23 H 1.09005 * 109.47067 * 25.03115 * 5 4 3 24 24 H 1.09003 * 109.46766 * 145.02353 * 5 4 3 25 25 H 1.09001 * 109.46706 * 300.00606 * 6 5 4 26 26 H 1.08997 * 109.46956 * 60.00216 * 6 5 4 27 27 H 0.96996 * 120.00275 * 180.02562 * 10 9 7 28 28 H 1.09004 * 109.47660 * 89.99846 * 16 15 4 29 29 H 1.09006 * 109.47344 * 209.99847 * 16 15 4 30 30 H 1.09004 * 109.47224 * 330.00116 * 16 15 4 31 31 H 1.09006 * 109.46914 * 90.00087 * 18 17 15 32 32 H 1.08999 * 109.47368 * 209.99937 * 18 17 15 33 33 H 1.08999 * 109.47385 * 330.00146 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0869 0.0000 4 7 3.6014 0.6638 0.0055 5 6 4.7822 1.5309 0.0119 6 6 5.2739 1.7336 -1.4227 7 6 6.4889 2.6251 -1.4160 8 1 6.8723 3.0084 -0.4819 9 6 7.1117 2.9505 -2.6023 10 7 8.1723 3.7281 -2.5965 11 14 6.4490 2.2870 -4.2178 12 1 5.4492 3.2361 -4.7699 13 1 7.5661 2.1278 -5.1831 14 1 5.8046 0.9695 -3.9848 15 6 3.6170 -0.6995 0.0034 16 6 4.8477 -1.5690 0.0085 17 6 2.3409 -1.1357 -0.0027 18 6 1.8897 -2.5736 -0.0063 19 1 -0.3633 -0.0004 -1.0276 20 1 -0.3634 -0.8897 0.5143 21 1 -0.3633 0.8903 0.5135 22 1 1.9748 2.1151 0.0004 23 1 4.5219 2.4960 0.4466 24 1 5.5707 1.0665 0.6041 25 1 5.5341 0.7685 -1.8573 26 1 4.4854 2.1980 -2.0148 27 1 8.6103 3.9573 -3.4310 28 1 5.1393 -1.7802 1.0373 29 1 4.6337 -2.5048 -0.5079 30 1 5.6607 -1.0509 -0.5004 31 1 1.7764 -2.9213 1.0206 32 1 0.9341 -2.6533 -0.5244 33 1 2.6324 -3.1861 -0.5175 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068944340.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:31 Heat of formation + Delta-G solvation = 4.160251 kcal Electronic energy + Delta-G solvation = -13382.671943 eV Core-core repulsion = 11214.588288 eV Total energy + Delta-G solvation = -2168.083656 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.19238 -36.34430 -34.62562 -33.20588 -32.27576 -29.55717 -28.53092 -25.74364 -25.32603 -22.63226 -20.14133 -19.63465 -19.04945 -17.01262 -16.58405 -15.80571 -15.49749 -14.91662 -14.76594 -14.05206 -13.93459 -13.85185 -13.65637 -13.47349 -13.31387 -13.04195 -12.94748 -12.75951 -12.50763 -12.04189 -11.99711 -11.82428 -11.79362 -11.55061 -10.86602 -9.03025 -8.65972 -8.38926 -6.44734 1.28672 1.30833 1.41723 1.43488 2.06160 2.20852 2.27082 2.96027 3.94292 4.07317 4.23621 4.32518 4.41473 4.54215 4.59256 4.69652 4.74321 4.75973 4.85024 4.97153 5.01235 5.06695 5.14365 5.19718 5.25835 5.32554 5.47543 5.52806 5.70936 6.11970 6.32621 6.52691 6.59044 6.66394 7.20891 8.76871 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.040869 B = 0.007934 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.957862 B = 3528.126876 C = 3602.508096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.186 4.186 3 C -0.038 4.038 4 N -0.447 5.447 5 C 0.126 3.874 6 C -0.011 4.011 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.017 3.983 10 N -0.940 5.940 11 Si 0.943 3.057 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.257 1.257 15 C -0.006 4.006 16 C -0.083 4.083 17 C -0.190 4.190 18 C -0.068 4.068 19 H 0.060 0.940 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.166 0.834 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.269 0.731 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.015 -10.858 4.183 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.193 4.193 3 C -0.167 4.167 4 N -0.121 5.121 5 C 0.004 3.996 6 C -0.049 4.049 7 C -0.572 4.572 8 H 0.064 0.936 9 C -0.182 4.182 10 N -0.580 5.580 11 Si 0.767 3.233 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.182 1.182 15 C -0.118 4.118 16 C -0.140 4.140 17 C -0.197 4.197 18 C -0.125 4.125 19 H 0.079 0.921 20 H 0.087 0.913 21 H 0.083 0.917 22 H 0.183 0.817 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.036 0.964 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.564 -10.542 4.088 16.903 hybrid contribution 0.392 0.490 -0.769 0.992 sum -12.172 -10.052 3.319 16.132 Atomic orbital electron populations 1.20064 0.88538 1.02389 1.01530 1.19751 0.96628 0.91894 1.10990 1.21954 0.82594 0.99941 1.12243 1.44358 1.06440 1.05977 1.55364 1.21706 0.85359 0.93758 0.98743 1.19721 0.95168 0.96288 0.93746 1.21188 1.11712 1.30060 0.94259 0.93630 1.25822 0.94724 0.94681 1.02929 1.70020 1.21668 1.37623 1.28712 0.85760 0.78425 0.79928 0.79155 1.19309 1.20296 1.18155 1.20650 0.97384 0.82978 1.10794 1.20341 0.92566 0.98196 1.02917 1.19564 0.91268 0.96650 1.12212 1.20079 1.01024 0.89711 1.01672 0.92133 0.91263 0.91674 0.81675 0.89505 0.89870 0.96355 0.96817 0.92144 0.90266 0.88944 0.93068 0.91622 0.91563 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.13 71.23 0.72 -0.83 16 2 C -0.19 -5.74 6.14 -19.99 -0.12 -5.87 16 3 C -0.04 -1.27 11.34 83.21 0.94 -0.33 16 4 N -0.45 -16.46 2.75 -509.96 -1.40 -17.86 16 5 C 0.13 4.97 5.57 86.38 0.48 5.45 16 6 C -0.01 -0.53 4.36 29.85 0.13 -0.40 16 7 C -0.53 -30.05 9.66 25.60 0.25 -29.81 16 8 H 0.05 2.76 7.99 -2.91 -0.02 2.74 16 9 C 0.02 0.98 5.47 84.65 0.46 1.44 16 10 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 11 Si 0.94 44.57 27.47 68.60 1.88 46.45 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 15 C -0.01 -0.21 6.89 41.08 0.28 0.07 16 16 C -0.08 -2.40 9.72 71.23 0.69 -1.71 16 17 C -0.19 -5.92 6.14 -19.99 -0.12 -6.04 16 18 C -0.07 -1.56 9.91 71.23 0.71 -0.85 16 19 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 20 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 21 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.17 4.94 8.06 -2.91 -0.02 4.92 16 23 H 0.09 3.31 8.12 -2.38 -0.02 3.29 16 24 H 0.08 3.20 7.89 -2.39 -0.02 3.19 16 25 H 0.02 0.88 6.72 -2.39 -0.02 0.86 16 26 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 27 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 2.24 7.14 -2.38 -0.02 2.22 16 30 H 0.05 1.66 7.34 -2.38 -0.02 1.64 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 33 H 0.06 1.33 7.14 -2.39 -0.02 1.31 16 Total: -1.00 -64.50 275.17 6.21 -58.29 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.01 Total: 9.44 kcal Atomic # 6 Polarization: -43.29 SS G_CDS: 4.42 Total: -38.87 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -1.10 Total: -75.31 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -64.50 6.21 -58.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068944340.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.450 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds