Wall clock time and date at job start Mon Mar 30 2020 02:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34327 * 125.30507 * 2 1 4 4 C 1.46963 * 106.48767 * 180.02562 * 3 2 1 5 5 C 1.41344 * 127.11443 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00449 * 180.30024 * 5 4 3 7 7 C 1.39685 * 119.99999 * 0.02562 * 5 4 3 8 8 N 1.31054 * 119.99500 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00282 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46919 * 60.00069 * 9 7 5 11 11 H 1.48499 * 109.47214 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47059 * 300.00320 * 9 7 5 13 13 C 1.39267 * 105.77881 * 0.25980 * 4 3 2 14 14 C 1.50707 * 126.04059 * 179.73858 * 13 4 3 15 15 N 1.34917 * 107.92411 * 359.57710 * 13 4 3 16 16 C 1.46506 * 124.79294 * 180.17263 * 15 13 4 17 17 C 1.52991 * 109.47368 * 113.83622 * 16 15 13 18 18 C 1.53004 * 109.46836 * 233.83899 * 16 15 13 19 19 H 1.09004 * 109.47198 * 85.04971 * 1 2 3 20 20 H 1.08999 * 109.47601 * 205.04735 * 1 2 3 21 21 H 1.09005 * 109.47244 * 325.05180 * 1 2 3 22 22 H 1.07999 * 126.75425 * 359.97438 * 3 2 1 23 23 H 0.96996 * 120.00002 * 179.97438 * 8 7 5 24 24 H 1.09004 * 109.46705 * 90.02187 * 14 13 4 25 25 H 1.08998 * 109.46967 * 210.02284 * 14 13 4 26 26 H 1.09002 * 109.46555 * 330.02825 * 14 13 4 27 27 H 1.09004 * 109.46762 * 353.83304 * 16 15 13 28 28 H 1.08997 * 109.47383 * 66.31435 * 17 16 15 29 29 H 1.09002 * 109.47262 * 186.31453 * 17 16 15 30 30 H 1.09003 * 109.47302 * 306.31210 * 17 16 15 31 31 H 1.08997 * 109.47690 * 59.99744 * 18 16 15 32 32 H 1.09002 * 109.47000 * 180.02562 * 18 16 15 33 33 H 1.09004 * 109.46959 * 299.99284 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2833 1.0962 0.0000 4 6 3.6744 0.6222 -0.0006 5 6 4.8452 1.4140 -0.0003 6 1 5.8165 0.9418 -0.0058 7 6 4.7461 2.8073 0.0012 8 7 3.5675 3.3803 0.0018 9 14 6.2935 3.8538 0.0008 10 1 7.0945 3.5524 -1.2128 11 1 5.9192 5.2908 0.0020 12 1 7.0968 3.5499 1.2122 13 6 3.6006 -0.7685 -0.0070 14 6 4.7705 -1.7185 -0.0156 15 7 2.2967 -1.1151 -0.0006 16 6 1.7979 -2.4927 -0.0006 17 6 1.0834 -2.7764 1.3221 18 6 0.8175 -2.6800 -1.1603 19 1 -0.3634 0.0887 -1.0239 20 1 -0.3634 -0.9310 0.4351 21 1 -0.3634 0.8424 0.5887 22 1 1.9506 2.1237 -0.0004 23 1 3.4986 4.3478 0.0032 24 1 5.0558 -1.9527 1.0100 25 1 4.4898 -2.6358 -0.5333 26 1 5.6119 -1.2539 -0.5297 27 1 2.6343 -3.1819 -0.1170 28 1 0.1832 -2.1654 1.3872 29 1 0.8110 -3.8308 1.3690 30 1 1.7470 -2.5354 2.1526 31 1 1.3265 -2.4778 -2.1027 32 1 0.4460 -3.7047 -1.1601 33 1 -0.0189 -1.9907 -1.0439 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082587820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:53 Heat of formation + Delta-G solvation = 30.353513 kcal Electronic energy + Delta-G solvation = -13875.014876 eV Core-core repulsion = 11708.067046 eV Total energy + Delta-G solvation = -2166.947831 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.58910 -34.67545 -32.75968 -31.40926 -28.63402 -27.86456 -26.92249 -25.33396 -22.42685 -21.03244 -19.03115 -17.10369 -16.11607 -14.94704 -14.55580 -14.10832 -13.89461 -12.93694 -12.89590 -12.55086 -12.22204 -11.91187 -11.76006 -11.69216 -11.42403 -11.13381 -11.05457 -11.02608 -10.70536 -10.46812 -10.32611 -10.05101 -9.67526 -9.09005 -9.02021 -6.82136 -6.32156 -6.18670 -3.73848 3.19830 3.27891 3.31547 3.76519 4.24578 4.34393 4.56729 5.14463 5.45223 5.52525 5.75135 5.79593 5.82057 5.92813 6.10275 6.16792 6.18578 6.31305 6.34531 6.39481 6.53309 6.57076 6.70159 6.72124 6.97699 7.52091 7.62857 7.93841 8.12765 8.51832 8.74779 9.13253 9.19500 9.48120 9.50541 10.77078 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.046962 B = 0.009741 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.088179 B = 2873.735045 C = 3275.314644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.027 4.027 3 C -0.192 4.192 4 C 0.045 3.955 5 C -0.437 4.437 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.830 5.830 9 Si 0.905 3.095 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C -0.155 4.155 14 C -0.039 4.039 15 N -0.445 5.445 16 C 0.134 3.866 17 C -0.163 4.163 18 C -0.167 4.167 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.060 0.940 22 H 0.151 0.849 23 H 0.267 0.733 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 -7.884 0.038 9.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.135 4.135 3 C -0.220 4.220 4 C 0.038 3.962 5 C -0.471 4.471 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.460 5.460 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.197 1.197 13 C -0.261 4.261 14 C -0.097 4.097 15 N -0.129 5.129 16 C 0.030 3.970 17 C -0.221 4.221 18 C -0.225 4.225 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.079 0.921 22 H 0.168 0.832 23 H 0.077 0.923 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.595 -7.985 0.037 9.213 hybrid contribution 0.740 0.514 -0.005 0.901 sum -3.855 -7.471 0.032 8.407 Atomic orbital electron populations 1.20349 0.91390 1.00924 1.00501 1.19835 0.91435 0.86890 1.15338 1.22418 0.92352 0.96720 1.10532 1.18250 0.92660 0.88435 0.96852 1.18678 0.92507 0.90188 1.45725 0.91830 1.25655 0.96442 0.98437 0.93814 1.69790 1.23529 1.10513 1.42209 0.86452 0.82643 0.78617 0.79170 1.19705 1.20890 1.19691 1.19974 0.82789 0.94311 1.28988 1.19691 0.95456 0.95437 0.99092 1.42738 1.04956 1.02523 1.62670 1.20911 0.96692 0.84635 0.94767 1.22283 1.01301 1.00750 0.97801 1.22317 1.00154 1.01375 0.98625 0.93147 0.92939 0.92058 0.83182 0.92253 0.94723 0.95172 0.92209 0.90144 0.91859 0.92472 0.92186 0.92358 0.92423 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 8.47 36.00 0.31 -1.05 16 2 C -0.03 -0.63 6.36 -81.83 -0.52 -1.15 16 3 C -0.19 -5.28 9.76 -37.43 -0.37 -5.64 16 4 C 0.04 1.27 6.10 -104.80 -0.64 0.63 16 5 C -0.44 -12.62 9.12 -37.86 -0.35 -12.97 16 6 H 0.06 1.77 7.36 -52.49 -0.39 1.38 16 7 C 0.07 1.86 5.49 -17.34 -0.10 1.77 16 8 N -0.83 -23.35 10.42 55.54 0.58 -22.77 16 9 Si 0.90 20.69 29.56 -169.99 -5.02 15.66 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 C -0.16 -3.92 6.99 -80.85 -0.57 -4.48 16 14 C -0.04 -0.83 9.75 36.01 0.35 -0.48 16 15 N -0.45 -9.99 2.58 -100.16 -0.26 -10.25 16 16 C 0.13 2.32 3.31 -67.93 -0.22 2.10 16 17 C -0.16 -2.46 9.20 37.15 0.34 -2.12 16 18 C -0.17 -2.49 9.05 37.16 0.34 -2.15 16 19 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 20 H 0.05 0.84 4.16 -51.93 -0.22 0.62 16 21 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 22 H 0.15 4.31 6.02 -52.49 -0.32 4.00 16 23 H 0.27 6.96 8.30 -40.82 -0.34 6.63 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.03 0.55 6.90 -51.93 -0.36 0.20 16 26 H 0.06 1.28 7.59 -51.93 -0.39 0.88 16 27 H 0.08 1.35 6.47 -51.93 -0.34 1.01 16 28 H 0.06 0.94 5.53 -51.93 -0.29 0.65 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.03 4.90 -51.93 -0.25 0.77 16 LS Contribution 261.48 15.07 3.94 3.94 Total: -1.00 -30.44 261.48 -6.81 -37.25 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.63 Total: 1.72 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: -1.42 Total: -25.55 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.32 Total: -33.02 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.44 -6.81 -37.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082587820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.606 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds