Wall clock time and date at job start Mon Mar 30 2020 02:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34327 * 125.30507 * 2 1 4 4 C 1.46963 * 106.48767 * 180.02562 * 3 2 1 5 5 C 1.41344 * 127.11443 * 180.02562 * 4 3 2 6 6 H 1.07995 * 120.00449 * 180.30024 * 5 4 3 7 7 C 1.39685 * 119.99999 * 0.02562 * 5 4 3 8 8 N 1.31054 * 119.99500 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00282 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46919 * 60.00069 * 9 7 5 11 11 H 1.48499 * 109.47214 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47059 * 300.00320 * 9 7 5 13 13 C 1.39267 * 105.77881 * 0.25980 * 4 3 2 14 14 C 1.50707 * 126.04059 * 179.73858 * 13 4 3 15 15 N 1.34917 * 107.92411 * 359.57710 * 13 4 3 16 16 C 1.46506 * 124.79294 * 180.17263 * 15 13 4 17 17 C 1.52991 * 109.47368 * 113.83622 * 16 15 13 18 18 C 1.53004 * 109.46836 * 233.83899 * 16 15 13 19 19 H 1.09004 * 109.47198 * 85.04971 * 1 2 3 20 20 H 1.08999 * 109.47601 * 205.04735 * 1 2 3 21 21 H 1.09005 * 109.47244 * 325.05180 * 1 2 3 22 22 H 1.07999 * 126.75425 * 359.97438 * 3 2 1 23 23 H 0.96996 * 120.00002 * 179.97438 * 8 7 5 24 24 H 1.09004 * 109.46705 * 90.02187 * 14 13 4 25 25 H 1.08998 * 109.46967 * 210.02284 * 14 13 4 26 26 H 1.09002 * 109.46555 * 330.02825 * 14 13 4 27 27 H 1.09004 * 109.46762 * 353.83304 * 16 15 13 28 28 H 1.08997 * 109.47383 * 66.31435 * 17 16 15 29 29 H 1.09002 * 109.47262 * 186.31453 * 17 16 15 30 30 H 1.09003 * 109.47302 * 306.31210 * 17 16 15 31 31 H 1.08997 * 109.47690 * 59.99744 * 18 16 15 32 32 H 1.09002 * 109.47000 * 180.02562 * 18 16 15 33 33 H 1.09004 * 109.46959 * 299.99284 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2833 1.0962 0.0000 4 6 3.6744 0.6222 -0.0006 5 6 4.8452 1.4140 -0.0003 6 1 5.8165 0.9418 -0.0058 7 6 4.7461 2.8073 0.0012 8 7 3.5675 3.3803 0.0018 9 14 6.2935 3.8538 0.0008 10 1 7.0945 3.5524 -1.2128 11 1 5.9192 5.2908 0.0020 12 1 7.0968 3.5499 1.2122 13 6 3.6006 -0.7685 -0.0070 14 6 4.7705 -1.7185 -0.0156 15 7 2.2967 -1.1151 -0.0006 16 6 1.7979 -2.4927 -0.0006 17 6 1.0834 -2.7764 1.3221 18 6 0.8175 -2.6800 -1.1603 19 1 -0.3634 0.0887 -1.0239 20 1 -0.3634 -0.9310 0.4351 21 1 -0.3634 0.8424 0.5887 22 1 1.9506 2.1237 -0.0004 23 1 3.4986 4.3478 0.0032 24 1 5.0558 -1.9527 1.0100 25 1 4.4898 -2.6358 -0.5333 26 1 5.6119 -1.2539 -0.5297 27 1 2.6343 -3.1819 -0.1170 28 1 0.1832 -2.1654 1.3872 29 1 0.8110 -3.8308 1.3690 30 1 1.7470 -2.5354 2.1526 31 1 1.3265 -2.4778 -2.1027 32 1 0.4460 -3.7047 -1.1601 33 1 -0.0189 -1.9907 -1.0439 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082587820.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:53 Heat of formation + Delta-G solvation = 13.031046 kcal Electronic energy + Delta-G solvation = -13875.766035 eV Core-core repulsion = 11708.067046 eV Total energy + Delta-G solvation = -2167.698989 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37878 -36.30003 -34.64099 -33.15232 -30.44922 -29.56967 -28.09920 -27.26410 -24.25162 -22.56035 -20.96725 -18.81715 -18.12112 -16.60714 -16.44999 -15.63169 -15.42307 -14.64105 -14.25057 -14.08769 -13.78488 -13.62052 -13.39927 -13.07245 -12.93077 -12.84114 -12.83682 -12.47891 -12.39812 -12.34145 -11.91070 -11.58092 -11.50263 -11.02369 -11.00874 -8.81245 -8.23511 -8.21155 -5.83350 1.37504 1.40062 1.51760 1.91186 2.35391 2.54193 2.68476 3.71378 3.86161 4.17808 4.22115 4.36011 4.48925 4.67677 4.70084 4.75605 4.82529 4.87206 4.91622 4.93706 4.99392 5.07968 5.27244 5.33777 5.38764 5.44993 5.62821 6.02628 6.11353 6.45722 6.73546 7.11641 7.31994 7.43295 7.52009 8.75261 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.046962 B = 0.009741 C = 0.008547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.088179 B = 2873.735045 C = 3275.314644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.013 4.013 3 C -0.247 4.247 4 C -0.014 4.014 5 C -0.473 4.473 6 H 0.059 0.941 7 C 0.016 3.984 8 N -0.861 5.861 9 Si 0.978 3.022 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.266 1.266 13 C -0.159 4.159 14 C -0.035 4.035 15 N -0.439 5.439 16 C 0.120 3.880 17 C -0.157 4.157 18 C -0.161 4.161 19 H 0.066 0.934 20 H 0.083 0.917 21 H 0.063 0.937 22 H 0.126 0.874 23 H 0.269 0.731 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 -10.055 0.038 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.124 4.124 3 C -0.275 4.275 4 C -0.021 4.021 5 C -0.507 4.507 6 H 0.077 0.923 7 C -0.192 4.192 8 N -0.492 5.492 9 Si 0.801 3.199 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.191 1.191 13 C -0.266 4.266 14 C -0.092 4.092 15 N -0.120 5.120 16 C 0.018 3.982 17 C -0.214 4.214 18 C -0.219 4.219 19 H 0.085 0.915 20 H 0.101 0.899 21 H 0.082 0.918 22 H 0.143 0.857 23 H 0.079 0.921 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.389 -10.200 0.037 11.536 hybrid contribution 0.894 1.015 -0.005 1.353 sum -4.495 -9.185 0.032 10.226 Atomic orbital electron populations 1.20434 0.87572 1.02727 1.01920 1.20334 0.93709 0.86157 1.12233 1.22306 0.93168 0.97107 1.14967 1.18761 0.93308 0.90553 0.99434 1.18958 0.92656 0.91491 1.47615 0.92267 1.26537 0.99939 0.99384 0.93315 1.69948 1.25480 1.10755 1.43043 0.85327 0.78342 0.76927 0.79310 1.19095 1.19858 1.19094 1.20520 0.85083 0.94109 1.26890 1.19709 0.93737 0.95720 1.00078 1.43136 1.04061 1.04678 1.60159 1.21424 0.98004 0.81481 0.97333 1.22228 1.00478 1.03429 0.95304 1.22281 0.99180 1.03965 0.96448 0.91542 0.89887 0.91777 0.85676 0.92059 0.93631 0.92067 0.93058 0.89257 0.91581 0.88426 0.94142 0.93906 0.88406 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.40 8.47 71.24 0.60 -1.80 16 2 C -0.01 -0.63 6.36 40.91 0.26 -0.37 16 3 C -0.25 -14.22 9.76 23.66 0.23 -13.98 16 4 C -0.01 -0.85 6.10 -19.98 -0.12 -0.97 16 5 C -0.47 -28.62 9.12 23.38 0.21 -28.41 16 6 H 0.06 3.45 7.36 -2.91 -0.02 3.43 16 7 C 0.02 0.89 5.49 85.16 0.47 1.36 16 8 N -0.86 -50.92 10.42 21.79 0.23 -50.70 16 9 Si 0.98 43.84 29.56 68.60 2.03 45.87 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 13 C -0.16 -8.04 6.99 42.33 0.30 -7.75 16 14 C -0.03 -1.45 9.75 71.24 0.69 -0.75 16 15 N -0.44 -19.21 2.58 -470.81 -1.21 -20.42 16 16 C 0.12 3.73 3.31 44.99 0.15 3.88 16 17 C -0.16 -4.08 9.20 71.98 0.66 -3.42 16 18 C -0.16 -4.14 9.05 71.98 0.65 -3.48 16 19 H 0.07 2.11 7.90 -2.38 -0.02 2.09 16 20 H 0.08 2.34 4.16 -2.39 -0.01 2.33 16 21 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 22 H 0.13 7.68 6.02 -2.91 -0.02 7.66 16 23 H 0.27 14.71 8.30 -92.71 -0.77 13.94 16 24 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 25 H 0.06 2.12 6.90 -2.39 -0.02 2.10 16 26 H 0.05 2.19 7.59 -2.39 -0.02 2.17 16 27 H 0.09 2.64 6.47 -2.38 -0.02 2.63 16 28 H 0.07 1.68 5.53 -2.39 -0.01 1.67 16 29 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.80 4.90 -2.38 -0.01 1.79 16 Total: -1.00 -70.19 261.48 6.24 -63.95 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 1.09 Total: 16.99 kcal Atomic # 6 Polarization: -59.80 SS G_CDS: 4.11 Total: -55.69 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -0.99 Total: -71.12 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.19 6.24 -63.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082587820.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.983 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds