Wall clock time and date at job start Mon Mar 30 2020 02:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46942 * 110.99556 * 2 1 4 4 C 1.53528 * 109.64524 * 52.78375 * 3 2 1 5 5 C 1.50845 * 107.81985 * 49.12829 * 4 3 2 6 6 C 1.35877 * 123.22683 * 344.25177 * 5 4 3 7 7 C 1.39376 * 107.99198 * 179.82901 * 6 5 4 8 8 N 1.31249 * 108.27277 * 0.08151 * 7 6 5 9 9 N 1.35360 * 128.98451 * 164.19909 * 5 4 3 10 10 C 1.37398 * 126.20059 * 0.13428 * 9 5 4 11 11 H 1.08002 * 119.99980 * 0.02562 * 10 9 5 12 12 C 1.38992 * 119.99804 * 179.97438 * 10 9 5 13 13 N 1.31284 * 120.00288 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99733 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46682 * 90.00123 * 14 12 10 16 16 H 1.48501 * 109.47064 * 210.00128 * 14 12 10 17 17 H 1.48491 * 109.47168 * 330.00433 * 14 12 10 18 18 C 1.47292 * 110.99852 * 124.59111 * 2 1 3 19 19 H 1.08992 * 109.47459 * 59.99879 * 1 2 3 20 20 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47033 * 299.99982 * 1 2 3 22 22 H 1.09000 * 109.43719 * 172.83804 * 3 2 1 23 23 H 1.08994 * 109.44015 * 292.76198 * 3 2 1 24 24 H 1.08997 * 109.78930 * 168.70938 * 4 3 2 25 25 H 1.08999 * 109.78510 * 289.49286 * 4 3 2 26 26 H 1.08002 * 125.86411 * 180.02562 * 7 6 5 27 27 H 0.96996 * 120.00572 * 180.02562 * 13 12 10 28 28 H 1.08996 * 109.70612 * 46.73764 * 18 2 1 29 29 H 1.08998 * 109.70160 * 167.35745 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3719 0.0000 4 6 1.3640 2.1671 1.1515 5 6 1.4860 1.3385 2.4061 6 6 1.7742 0.0107 2.3963 7 6 1.8134 -0.4310 3.7177 8 7 1.5566 0.5904 4.5008 9 7 1.3447 1.7216 3.6966 10 6 1.0485 2.9881 4.1394 11 1 0.9050 3.7888 3.4290 12 6 0.9324 3.2386 5.5017 13 7 1.1063 2.2652 6.3653 14 14 0.5290 4.9603 6.1036 15 1 -0.9445 5.1177 6.2016 16 1 1.1396 5.1730 7.4405 17 1 1.0709 5.9587 5.1473 18 6 1.9969 -0.7807 1.1320 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0776 1.3451 0.1281 23 1 1.7543 1.8530 -0.9478 24 1 1.8918 3.1120 1.2804 25 1 0.3129 2.3581 0.9350 26 1 2.0188 -1.4407 4.0415 27 1 1.0249 2.4399 7.3159 28 1 1.4720 -1.7337 1.1977 29 1 3.0633 -0.9566 0.9915 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082807727.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:06 Heat of formation + Delta-G solvation = 83.241509 kcal Electronic energy + Delta-G solvation = -13743.276513 eV Core-core repulsion = 11475.081735 eV Total energy + Delta-G solvation = -2268.194778 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.06785 -37.07671 -33.53299 -31.47522 -29.78480 -28.68410 -26.49452 -24.92258 -22.79991 -21.11116 -20.34557 -17.73975 -17.06884 -15.50414 -14.97640 -14.48754 -14.29734 -13.94245 -13.14433 -12.96272 -12.43189 -11.99042 -11.89777 -11.69505 -11.33612 -11.29895 -11.07840 -10.83697 -10.69211 -10.49507 -10.12197 -9.39407 -8.79013 -8.04748 -7.74285 -6.92223 -6.57422 -4.28236 2.93950 3.03503 3.08023 3.54823 3.81671 4.22567 4.54872 4.73745 5.00323 5.53488 5.61577 5.75531 5.94538 6.06180 6.13989 6.24957 6.28518 6.34989 6.41968 6.47265 6.57246 6.83857 6.93943 7.12806 7.47627 7.58132 7.76484 7.88951 8.23335 8.68892 9.42724 9.67345 10.39215 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.049464 B = 0.010478 C = 0.009181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.935988 B = 2671.551868 C = 3048.923087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.066 3.934 4 C -0.066 4.066 5 C -0.031 4.031 6 C -0.314 4.314 7 C -0.035 4.035 8 N -0.269 5.269 9 N -0.138 5.138 10 C -0.327 4.327 11 H 0.113 0.887 12 C 0.048 3.952 13 N -0.773 5.773 14 Si 0.932 3.068 15 H -0.270 1.270 16 H -0.275 1.275 17 H -0.264 1.264 18 C 0.147 3.853 19 H 0.056 0.944 20 H 0.058 0.942 21 H 0.039 0.961 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.149 0.851 27 H 0.274 0.726 28 H 0.063 0.937 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 0.211 -7.758 7.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.261 5.261 3 C -0.063 4.063 4 C -0.107 4.107 5 C -0.163 4.163 6 C -0.329 4.329 7 C -0.210 4.210 8 N -0.098 5.098 9 N 0.097 4.903 10 C -0.459 4.459 11 H 0.131 0.869 12 C -0.169 4.169 13 N -0.400 5.400 14 Si 0.756 3.244 15 H -0.196 1.196 16 H -0.200 1.200 17 H -0.188 1.188 18 C 0.019 3.981 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.058 0.942 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.166 0.834 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.428 0.331 -6.699 6.721 hybrid contribution -0.384 0.885 0.451 1.065 sum -0.812 1.216 -6.248 6.417 Atomic orbital electron populations 1.22311 0.88318 1.01333 1.00514 1.62477 1.07822 1.13111 1.42688 1.22092 0.99606 0.88180 0.96434 1.20520 1.00666 0.97786 0.91709 1.20216 1.14553 0.94801 0.86730 1.19850 1.23482 0.94409 0.95200 1.23120 1.07697 0.98545 0.91603 1.78414 1.25217 0.90679 1.15527 1.44550 1.37105 1.06931 1.01737 1.19857 1.49977 0.83257 0.92820 0.86908 1.25622 0.95615 0.99859 0.95775 1.70207 1.35715 1.31462 1.02597 0.85869 0.79120 0.80645 0.78798 1.19565 1.20036 1.18779 1.20317 0.98495 0.94470 0.84852 0.92534 0.92282 0.94206 0.91030 0.91157 0.91546 0.91914 0.83401 0.91570 0.91896 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.86 60.07 0.53 0.92 15 2 N -0.54 -9.33 5.20 -243.58 -1.27 -10.60 15 3 C 0.07 1.10 5.97 -3.53 -0.02 1.08 15 4 C -0.07 -1.30 5.36 -27.54 -0.15 -1.44 15 5 C -0.03 -0.75 6.05 -81.81 -0.49 -1.24 15 6 C -0.31 -7.28 5.53 -104.99 -0.58 -7.86 15 7 C -0.04 -0.89 12.01 -17.38 -0.21 -1.10 15 8 N -0.27 -7.80 10.45 30.59 0.32 -7.48 15 9 N -0.14 -3.86 3.72 -7.84 -0.03 -3.89 15 10 C -0.33 -8.90 10.09 -14.78 -0.15 -9.05 15 11 H 0.11 2.80 7.70 -52.49 -0.40 2.40 15 12 C 0.05 1.27 5.50 -17.51 -0.10 1.17 15 13 N -0.77 -21.84 11.82 55.49 0.66 -21.18 15 14 Si 0.93 19.29 29.55 -169.99 -5.02 14.26 15 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 15 16 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 17 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 18 C 0.15 2.77 6.16 -4.71 -0.03 2.74 15 19 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.06 0.89 8.02 -51.93 -0.42 0.47 15 21 H 0.04 0.75 5.65 -51.93 -0.29 0.46 15 22 H 0.07 1.20 8.07 -51.93 -0.42 0.78 15 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.07 1.26 8.14 -51.93 -0.42 0.83 15 25 H 0.06 1.18 7.02 -51.93 -0.36 0.82 15 26 H 0.15 3.24 8.06 -52.49 -0.42 2.82 15 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 15 28 H 0.06 1.10 7.96 -51.93 -0.41 0.69 15 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 LS Contribution 240.93 15.07 3.63 3.63 Total: -1.00 -31.09 240.93 -6.47 -37.56 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -3.56 Total: 2.48 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -1.19 Total: -14.78 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.32 Total: -43.15 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.09 -6.47 -37.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082807727.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.802 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds