Wall clock time and date at job start Mon Mar 30 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46832 * 60.15462 * 3 2 1 5 5 C 1.52990 * 109.47568 * 300.15076 * 3 2 1 6 6 N 1.46901 * 109.46957 * 180.14393 * 3 2 1 7 7 C 1.46904 * 111.00056 * 180.02562 * 6 3 2 8 8 C 1.53001 * 109.46929 * 184.95121 * 7 6 3 9 9 C 1.50696 * 115.54952 * 294.79763 * 8 7 6 10 10 H 1.07998 * 119.99768 * 95.20861 * 9 8 7 11 11 C 1.37883 * 120.00039 * 274.92664 * 9 8 7 12 12 N 1.31509 * 119.99940 * 355.42415 * 11 9 8 13 13 Si 1.86797 * 119.99828 * 175.41895 * 11 9 8 14 14 H 1.48505 * 109.46928 * 90.00493 * 13 11 9 15 15 H 1.48498 * 109.47060 * 209.99912 * 13 11 9 16 16 H 1.48502 * 109.47325 * 330.00587 * 13 11 9 17 17 C 1.53004 * 117.49978 * 80.47200 * 8 7 6 18 18 C 1.53004 * 117.49332 * 149.12852 * 8 7 6 19 19 H 4.44648 * 5.63301 * 180.02562 * 4 1 2 20 20 H 1.08997 * 109.46841 * 180.02562 * 4 3 2 21 21 H 1.09008 * 109.46678 * 299.99145 * 4 3 2 22 22 H 1.08992 * 109.47347 * 59.99846 * 4 3 2 23 23 H 1.09001 * 109.46910 * 300.00268 * 5 3 2 24 24 H 1.08999 * 109.46951 * 59.99762 * 5 3 2 25 25 H 1.08997 * 109.47622 * 179.97438 * 5 3 2 26 26 H 1.00895 * 111.00188 * 303.95891 * 6 3 2 27 27 H 1.09001 * 109.46990 * 64.94993 * 7 6 3 28 28 H 1.09002 * 109.46887 * 304.95206 * 7 6 3 29 29 H 0.96999 * 119.99831 * 184.99752 * 12 11 9 30 30 H 1.08993 * 117.49795 * 215.00319 * 17 8 7 31 31 H 1.09001 * 117.49533 * 0.02562 * 17 8 7 32 32 H 1.08995 * 117.50185 * 359.97438 * 18 8 7 33 33 H 1.09002 * 117.49226 * 144.97307 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7170 -1.2513 5 6 3.1564 -0.7236 1.2472 6 7 3.1350 1.3859 0.0035 7 6 4.6035 1.4258 0.0030 8 6 5.0743 2.8759 0.1311 9 6 4.7283 3.7763 -1.0267 10 1 3.8391 4.3881 -0.9880 11 6 5.5500 3.8234 -2.1329 12 7 6.6810 3.1524 -2.1410 13 14 5.0566 4.8403 -3.6202 14 1 5.5881 6.2194 -3.4752 15 1 5.6140 4.2217 -4.8497 16 1 3.5755 4.8883 -3.7178 17 6 5.0816 3.4953 1.5302 18 6 6.4020 3.1267 0.8490 19 1 -1.0499 0.0001 -0.0002 20 1 4.2462 -0.7170 -1.2510 21 1 2.7934 -1.7450 -1.2539 22 1 2.7927 -0.2010 -2.1398 23 1 2.7928 -0.2123 2.1386 24 1 2.7935 -1.7514 1.2445 25 1 4.2464 -0.7235 1.2470 26 1 2.7592 1.9040 -0.7765 27 1 4.9781 1.0032 -0.9293 28 1 4.9830 0.8449 0.8436 29 1 7.2930 3.2425 -2.8881 30 1 4.8361 4.5540 1.6131 31 1 4.7514 2.8695 2.3593 32 1 6.9398 2.2587 1.2303 33 1 7.0253 3.9428 0.4835 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:45 Heat of formation + Delta-G solvation = 74.664604 kcal Electronic energy + Delta-G solvation = -13646.064621 eV Core-core repulsion = 11481.038264 eV Total energy + Delta-G solvation = -2165.026357 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.06351 -35.97863 -32.08305 -31.82222 -29.70921 -27.04598 -25.70121 -24.78516 -21.22360 -20.83512 -18.98099 -17.41022 -15.96133 -15.18362 -14.61558 -14.44406 -14.05634 -13.61355 -13.04193 -12.54902 -12.35857 -11.71719 -11.44204 -11.35019 -11.12060 -10.97190 -10.82160 -10.78310 -10.45497 -10.18253 -10.02996 -9.95419 -9.28083 -8.80429 -8.37365 -8.02627 -7.51067 -5.99624 -4.06684 3.09467 3.15406 3.28912 3.36380 3.39924 4.41352 4.54385 4.98579 5.27966 5.31795 5.46678 5.58510 5.86559 5.91612 6.00470 6.03363 6.24714 6.28991 6.44263 6.47946 6.57006 6.63374 6.87444 6.90780 6.96421 7.23853 7.53005 7.63695 7.87424 7.90980 8.02022 8.24230 8.52997 8.96887 9.58931 11.07349 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.029131 B = 0.010462 C = 0.008987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.956965 B = 2675.587426 C = 3115.017260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.149 4.149 3 C 0.211 3.789 4 C -0.176 4.176 5 C -0.134 4.134 6 N -0.667 5.667 7 C 0.102 3.898 8 C 0.046 3.954 9 C -0.492 4.492 10 H 0.059 0.941 11 C 0.069 3.931 12 N -0.880 5.880 13 Si 0.885 3.115 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.201 4.201 18 C -0.155 4.155 19 H 0.214 0.786 20 H 0.071 0.929 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.350 0.650 27 H 0.037 0.963 28 H 0.046 0.954 29 H 0.258 0.742 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.957 -6.618 2.994 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.150 4.150 3 C 0.120 3.880 4 C -0.235 4.235 5 C -0.191 4.191 6 N -0.298 5.298 7 C -0.027 4.027 8 C 0.046 3.954 9 C -0.530 4.530 10 H 0.077 0.923 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.713 3.287 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.239 4.239 18 C -0.193 4.193 19 H 0.230 0.770 20 H 0.090 0.910 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.170 0.830 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.844 -6.639 3.526 9.521 hybrid contribution -0.126 0.357 -1.826 1.865 sum -5.970 -6.282 1.700 8.831 Atomic orbital electron populations 1.24738 0.95690 1.01348 1.02378 1.23000 0.93916 0.99252 0.98811 1.17898 0.83661 0.91318 0.95100 1.22526 1.02489 1.00406 0.98106 1.21843 1.01554 0.98803 0.96936 1.60667 1.10068 1.08252 1.50830 1.21591 0.84983 0.97621 0.98477 1.18741 0.95650 0.91383 0.89663 1.20476 1.09227 1.23944 0.99306 0.92266 1.24997 0.95098 0.95151 0.98100 1.70002 1.09241 1.40947 1.31494 0.86697 0.78959 0.80317 0.82701 1.20751 1.21336 1.19781 1.22873 1.03519 0.99734 0.97743 1.22500 0.90927 1.01382 1.04535 0.76956 0.90974 0.92704 0.92321 0.91744 0.92790 0.91434 0.83001 0.94516 0.93589 0.93170 0.90983 0.91761 0.92352 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.20 19.25 29.55 0.57 -2.63 16 2 C -0.15 -2.46 12.03 -37.12 -0.45 -2.91 16 3 C 0.21 3.58 0.88 -134.39 -0.12 3.46 16 4 C -0.18 -2.82 8.18 37.16 0.30 -2.51 16 5 C -0.13 -2.02 8.20 37.15 0.30 -1.72 16 6 N -0.67 -13.33 6.03 -102.82 -0.62 -13.95 16 7 C 0.10 2.21 4.73 -3.82 -0.02 2.20 16 8 C 0.05 1.13 1.65 -155.66 -0.26 0.88 16 9 C -0.49 -13.17 8.32 -34.44 -0.29 -13.46 16 10 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 11 C 0.07 1.87 5.43 -17.82 -0.10 1.77 16 12 N -0.88 -24.56 12.65 55.43 0.70 -23.86 16 13 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 C -0.20 -4.55 9.96 -26.69 -0.27 -4.82 16 18 C -0.16 -3.71 9.14 -26.69 -0.24 -3.95 16 19 H 0.21 2.17 7.80 -54.10 -0.42 1.75 16 20 H 0.07 1.20 6.52 -51.93 -0.34 0.86 16 21 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 1.02 6.30 -51.93 -0.33 0.69 16 26 H 0.35 7.48 8.26 -39.29 -0.32 7.16 16 27 H 0.04 0.87 6.58 -51.93 -0.34 0.53 16 28 H 0.05 0.94 6.00 -51.93 -0.31 0.63 16 29 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 30 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 LS Contribution 280.05 15.07 4.22 4.22 Total: -1.00 -27.88 280.05 -6.27 -34.15 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.99 Total: 7.19 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.55 Total: -23.69 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.08 Total: -37.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -27.88 -6.27 -34.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.817 kcal (2) G-P(sol) polarization free energy of solvation -27.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds