Wall clock time and date at job start Mon Mar 30 2020 02:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53008 * 109.46832 * 60.15462 * 3 2 1 5 5 C 1.52990 * 109.47568 * 300.15076 * 3 2 1 6 6 N 1.46901 * 109.46957 * 180.14393 * 3 2 1 7 7 C 1.46904 * 111.00056 * 180.02562 * 6 3 2 8 8 C 1.53001 * 109.46929 * 184.95121 * 7 6 3 9 9 C 1.50696 * 115.54952 * 294.79763 * 8 7 6 10 10 H 1.07998 * 119.99768 * 95.20861 * 9 8 7 11 11 C 1.37883 * 120.00039 * 274.92664 * 9 8 7 12 12 N 1.31509 * 119.99940 * 355.42415 * 11 9 8 13 13 Si 1.86797 * 119.99828 * 175.41895 * 11 9 8 14 14 H 1.48505 * 109.46928 * 90.00493 * 13 11 9 15 15 H 1.48498 * 109.47060 * 209.99912 * 13 11 9 16 16 H 1.48502 * 109.47325 * 330.00587 * 13 11 9 17 17 C 1.53004 * 117.49978 * 80.47200 * 8 7 6 18 18 C 1.53004 * 117.49332 * 149.12852 * 8 7 6 19 19 H 4.44648 * 5.63301 * 180.02562 * 4 1 2 20 20 H 1.08997 * 109.46841 * 180.02562 * 4 3 2 21 21 H 1.09008 * 109.46678 * 299.99145 * 4 3 2 22 22 H 1.08992 * 109.47347 * 59.99846 * 4 3 2 23 23 H 1.09001 * 109.46910 * 300.00268 * 5 3 2 24 24 H 1.08999 * 109.46951 * 59.99762 * 5 3 2 25 25 H 1.08997 * 109.47622 * 179.97438 * 5 3 2 26 26 H 1.00895 * 111.00188 * 303.95891 * 6 3 2 27 27 H 1.09001 * 109.46990 * 64.94993 * 7 6 3 28 28 H 1.09002 * 109.46887 * 304.95206 * 7 6 3 29 29 H 0.96999 * 119.99831 * 184.99752 * 12 11 9 30 30 H 1.08993 * 117.49795 * 215.00319 * 17 8 7 31 31 H 1.09001 * 117.49533 * 0.02562 * 17 8 7 32 32 H 1.08995 * 117.50185 * 359.97438 * 18 8 7 33 33 H 1.09002 * 117.49226 * 144.97307 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1563 -0.7170 -1.2513 5 6 3.1564 -0.7236 1.2472 6 7 3.1350 1.3859 0.0035 7 6 4.6035 1.4258 0.0030 8 6 5.0743 2.8759 0.1311 9 6 4.7283 3.7763 -1.0267 10 1 3.8391 4.3881 -0.9880 11 6 5.5500 3.8234 -2.1329 12 7 6.6810 3.1524 -2.1410 13 14 5.0566 4.8403 -3.6202 14 1 5.5881 6.2194 -3.4752 15 1 5.6140 4.2217 -4.8497 16 1 3.5755 4.8883 -3.7178 17 6 5.0816 3.4953 1.5302 18 6 6.4020 3.1267 0.8490 19 1 -1.0499 0.0001 -0.0002 20 1 4.2462 -0.7170 -1.2510 21 1 2.7934 -1.7450 -1.2539 22 1 2.7927 -0.2010 -2.1398 23 1 2.7928 -0.2123 2.1386 24 1 2.7935 -1.7514 1.2445 25 1 4.2464 -0.7235 1.2470 26 1 2.7592 1.9040 -0.7765 27 1 4.9781 1.0032 -0.9293 28 1 4.9830 0.8449 0.8436 29 1 7.2930 3.2425 -2.8881 30 1 4.8361 4.5540 1.6131 31 1 4.7514 2.8695 2.3593 32 1 6.9398 2.2587 1.2303 33 1 7.0253 3.9428 0.4835 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:45 Heat of formation + Delta-G solvation = 58.484741 kcal Electronic energy + Delta-G solvation = -13646.766233 eV Core-core repulsion = 11481.038264 eV Total energy + Delta-G solvation = -2165.727969 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.57619 -37.69627 -33.96607 -33.30729 -31.10135 -28.28481 -27.66588 -26.47775 -22.83858 -22.48701 -20.83929 -18.69062 -17.86496 -16.66895 -16.52464 -15.91617 -15.70362 -15.14999 -14.57068 -14.26094 -13.79152 -13.43531 -12.99473 -12.86707 -12.79854 -12.65939 -12.39572 -12.34898 -12.18812 -11.94168 -11.48343 -11.20836 -11.05151 -10.76792 -10.35840 -9.89584 -9.12246 -8.06226 -6.18073 1.39851 1.42597 1.51326 1.88956 1.98742 2.43443 3.20684 3.34358 3.50794 3.80465 4.06470 4.18446 4.38627 4.60364 4.68276 4.70600 4.72446 4.79550 4.89789 5.01136 5.03258 5.10681 5.18537 5.28778 5.33299 5.37429 5.68151 5.73693 5.83561 6.35888 6.50234 6.57826 6.77887 6.90394 7.49621 9.00047 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.029131 B = 0.010462 C = 0.008987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.956965 B = 2675.587426 C = 3115.017260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.203 4.203 3 C 0.208 3.792 4 C -0.170 4.170 5 C -0.130 4.130 6 N -0.669 5.669 7 C 0.119 3.881 8 C 0.022 3.978 9 C -0.502 4.502 10 H 0.049 0.951 11 C 0.026 3.974 12 N -0.905 5.905 13 Si 0.943 3.057 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.269 1.269 17 C -0.182 4.182 18 C -0.159 4.159 19 H 0.251 0.749 20 H 0.059 0.941 21 H 0.077 0.923 22 H 0.045 0.955 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.338 0.662 27 H 0.012 0.988 28 H 0.059 0.941 29 H 0.258 0.742 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 -7.314 3.339 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.203 4.203 3 C 0.117 3.883 4 C -0.229 4.229 5 C -0.187 4.187 6 N -0.300 5.300 7 C -0.010 4.010 8 C 0.022 3.978 9 C -0.540 4.540 10 H 0.067 0.933 11 C -0.174 4.174 12 N -0.543 5.543 13 Si 0.770 3.230 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.193 1.193 17 C -0.219 4.219 18 C -0.197 4.197 19 H 0.268 0.732 20 H 0.078 0.922 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.156 0.844 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.367 -7.339 3.884 11.100 hybrid contribution 0.263 0.565 -1.899 1.999 sum -7.104 -6.773 1.985 10.015 Atomic orbital electron populations 1.25660 0.96524 0.98626 0.99969 1.23116 0.94352 1.01740 1.01132 1.17969 0.84616 0.89587 0.96122 1.22447 1.01591 1.01563 0.97313 1.21818 1.01232 0.99862 0.95786 1.60649 1.08637 1.10541 1.50133 1.21296 0.86242 0.95797 0.97672 1.18933 0.96240 0.92685 0.89960 1.20675 1.08759 1.24135 1.00454 0.93326 1.25615 0.95105 0.96309 1.00362 1.70099 1.09996 1.42118 1.32130 0.85785 0.78703 0.78869 0.79687 1.20561 1.21177 1.19336 1.22843 1.01958 0.99751 0.97369 1.22403 0.91007 1.01167 1.05172 0.73232 0.92194 0.90384 0.93553 0.92156 0.90496 0.91834 0.84359 0.97030 0.92268 0.93288 0.91373 0.89665 0.90996 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.84 19.25 74.32 1.43 -3.41 16 2 C -0.20 -6.30 12.03 31.12 0.37 -5.93 16 3 C 0.21 6.81 0.88 1.72 0.00 6.81 16 4 C -0.17 -5.33 8.18 71.98 0.59 -4.74 16 5 C -0.13 -3.69 8.20 71.98 0.59 -3.10 16 6 N -0.67 -26.54 6.03 -479.21 -2.89 -29.43 16 7 C 0.12 5.17 4.73 86.30 0.41 5.58 16 8 C 0.02 1.10 1.65 -52.93 -0.09 1.01 16 9 C -0.50 -27.18 8.32 25.60 0.21 -26.96 16 10 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 11 C 0.03 1.43 5.43 84.66 0.46 1.89 16 12 N -0.91 -51.21 12.65 21.45 0.27 -50.94 16 13 Si 0.94 43.34 29.54 68.60 2.03 45.36 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 C -0.18 -8.07 9.96 30.62 0.30 -7.77 16 18 C -0.16 -7.61 9.14 30.62 0.28 -7.33 16 19 H 0.25 3.97 7.80 -4.42 -0.03 3.93 16 20 H 0.06 1.99 6.52 -2.39 -0.02 1.98 16 21 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 22 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.83 6.30 -2.39 -0.02 1.81 16 26 H 0.34 14.58 8.26 -89.70 -0.74 13.84 16 27 H 0.01 0.56 6.58 -2.39 -0.02 0.54 16 28 H 0.06 2.39 6.00 -2.39 -0.01 2.38 16 29 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 30 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.08 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 33 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -58.92 280.05 4.31 -54.61 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.34 Total: 24.34 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 4.56 Total: -43.94 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -2.62 Total: -80.37 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -58.92 4.31 -54.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.095 kcal (2) G-P(sol) polarization free energy of solvation -58.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds