Wall clock time and date at job start Mon Mar 30 2020 02:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86795 * 120.00087 * 2 1 4 4 H 1.48503 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46978 * 299.99598 * 3 2 1 6 6 H 1.48497 * 109.47301 * 60.00110 * 3 2 1 7 7 C 1.40652 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99644 * 180.02562 * 7 2 1 9 9 C 1.38797 * 120.00288 * 0.02562 * 7 2 1 10 10 C 1.38222 * 119.99907 * 179.97438 * 9 7 2 11 11 C 1.46269 * 120.00059 * 180.02562 * 10 9 7 12 12 C 1.40397 * 120.22110 * 359.97438 * 11 10 9 13 13 C 1.37677 * 119.78700 * 180.02562 * 12 11 10 14 14 C 1.38605 * 120.25407 * 0.02562 * 13 12 11 15 15 C 1.38460 * 120.46113 * 359.97438 * 14 13 12 16 16 C 1.37905 * 120.20275 * 0.02562 * 15 14 13 17 17 Cl 1.73604 * 120.12841 * 179.97438 * 16 15 14 18 18 H 0.96995 * 119.99981 * 0.02562 * 1 2 3 19 19 H 1.07999 * 120.00068 * 359.97438 * 9 7 2 20 20 H 1.08005 * 120.00479 * 0.02562 * 10 9 7 21 21 H 1.07998 * 120.11022 * 0.04381 * 12 11 10 22 22 H 1.08001 * 119.87424 * 179.97438 * 13 12 11 23 23 H 1.08003 * 119.76653 * 179.72831 * 14 13 12 24 24 H 1.08001 * 119.89592 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 3.6995 1.3463 0.0006 5 1 1.8808 2.3963 -1.2126 6 1 1.8808 2.3964 1.2125 7 6 2.0087 -1.2181 0.0005 8 1 3.0887 -1.2182 0.0010 9 6 1.3147 -2.4201 0.0005 10 6 2.0058 -3.6172 0.0005 11 6 1.2744 -4.8839 0.0000 12 6 -0.1296 -4.8893 0.0000 13 6 -0.8089 -6.0868 0.0000 14 6 -0.1121 -7.2850 0.0005 15 6 1.2725 -7.2918 0.0005 16 6 1.9721 -6.1034 0.0005 17 17 3.7081 -6.1141 0.0012 18 1 -0.4850 0.8400 -0.0004 19 1 0.2347 -2.4201 0.0005 20 1 3.0858 -3.6173 0.0010 21 1 -0.6749 -3.9572 -0.0003 22 1 -1.8889 -6.0926 0.0004 23 1 -0.6530 -8.2198 0.0050 24 1 1.8062 -8.2307 0.0005 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084444845.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:27 Heat of formation + Delta-G solvation = 0.461755 kcal Electronic energy + Delta-G solvation = -10580.355755 eV Core-core repulsion = 8483.436034 eV Total energy + Delta-G solvation = -2096.919721 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.035 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.01236 -35.39294 -34.76644 -32.22342 -29.72204 -29.11810 -25.16553 -22.17972 -21.24270 -18.82878 -17.26835 -16.02470 -15.30397 -14.51157 -14.09267 -13.27605 -12.86273 -12.65898 -12.51393 -11.65982 -11.50627 -11.35525 -10.84502 -10.62043 -10.45379 -10.27868 -10.03671 -9.64807 -9.44664 -8.91775 -7.92850 -7.33654 -7.23034 -4.53448 2.01083 2.22141 2.77040 2.84511 2.91815 3.23844 3.60398 3.60582 4.63724 5.29266 5.66263 5.77741 5.98602 6.34649 6.42979 6.61253 6.70757 6.85969 7.08719 7.23326 7.31593 7.46231 7.70639 7.88294 8.02662 8.26162 8.64423 8.78675 9.64960 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.042819 B = 0.008052 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.760938 B = 3476.423370 C = 4120.342344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.066 3.934 3 Si 0.926 3.074 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.407 4.407 8 H 0.085 0.915 9 C 0.079 3.921 10 C -0.403 4.403 11 C 0.069 3.931 12 C -0.183 4.183 13 C -0.091 4.091 14 C -0.210 4.210 15 C -0.084 4.084 16 C -0.109 4.109 17 Cl -0.102 7.102 18 H 0.294 0.706 19 H 0.094 0.906 20 H 0.095 0.905 21 H 0.120 0.880 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -2.933 0.001 2.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.158 4.158 3 Si 0.748 3.252 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.433 4.433 8 H 0.103 0.897 9 C 0.057 3.943 10 C -0.424 4.424 11 C 0.068 3.932 12 C -0.202 4.202 13 C -0.109 4.109 14 C -0.229 4.229 15 C -0.103 4.103 16 C -0.135 4.135 17 Cl -0.074 7.074 18 H 0.105 0.895 19 H 0.111 0.889 20 H 0.113 0.887 21 H 0.138 0.862 22 H 0.124 0.876 23 H 0.125 0.875 24 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.168 -2.750 0.002 2.755 hybrid contribution 0.376 0.677 0.000 0.774 sum 0.543 -2.073 0.002 2.143 Atomic orbital electron populations 1.69486 1.08303 1.31261 1.30429 1.26574 0.95050 1.03192 0.90964 0.85950 0.81069 0.79025 0.79114 1.17660 1.19171 1.19177 1.19972 0.95992 0.90869 1.36443 0.89715 1.20793 0.97445 0.91814 0.84199 1.21173 0.96947 0.89268 1.35042 1.18897 0.92022 0.92411 0.89848 1.21164 0.93274 0.97547 1.08183 1.20852 0.98589 0.92782 0.98663 1.20521 0.93091 0.97182 1.12067 1.20599 0.94089 0.95701 0.99877 1.20744 0.82338 0.94570 1.15854 1.98248 1.12790 1.98835 1.97515 0.89478 0.88859 0.88687 0.86221 0.87596 0.87537 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.11 12.85 55.59 0.71 -17.40 14 2 C 0.07 1.52 5.51 -17.18 -0.09 1.42 14 3 Si 0.93 16.90 29.57 -169.99 -5.03 11.87 14 4 H -0.25 -4.63 7.11 56.52 0.40 -4.23 14 5 H -0.27 -4.75 7.11 56.52 0.40 -4.35 14 6 H -0.27 -4.76 7.11 56.52 0.40 -4.35 14 7 C -0.41 -10.13 9.03 -38.46 -0.35 -10.48 14 8 H 0.08 2.06 7.86 -52.49 -0.41 1.65 14 9 C 0.08 2.03 8.80 -39.38 -0.35 1.68 14 10 C -0.40 -10.20 9.30 -36.36 -0.34 -10.53 14 11 C 0.07 1.65 5.88 -105.01 -0.62 1.03 14 12 C -0.18 -4.04 9.43 -38.97 -0.37 -4.40 14 13 C -0.09 -1.74 10.02 -39.65 -0.40 -2.14 14 14 C -0.21 -3.86 10.04 -39.36 -0.40 -4.26 14 15 C -0.08 -1.63 9.81 -39.62 -0.39 -2.01 14 16 C -0.11 -2.37 6.37 -38.85 -0.25 -2.62 14 17 Cl -0.10 -2.07 27.45 -51.86 -1.42 -3.49 14 18 H 0.29 6.08 8.29 -40.82 -0.34 5.74 14 19 H 0.09 2.43 5.47 -52.49 -0.29 2.14 14 20 H 0.10 2.43 6.98 -52.48 -0.37 2.07 14 21 H 0.12 2.64 6.18 -52.49 -0.32 2.31 14 22 H 0.11 1.72 8.06 -52.49 -0.42 1.30 14 23 H 0.11 1.64 8.06 -52.48 -0.42 1.22 14 24 H 0.11 1.84 8.06 -52.49 -0.42 1.42 14 LS Contribution 234.33 15.07 3.53 3.53 Total: -1.00 -25.36 234.33 -7.54 -32.90 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -1.79 Total: 4.91 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -3.54 Total: -32.32 kcal Atomic # 7 Polarization: -18.11 SS G_CDS: 0.71 Total: -17.40 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -1.42 Total: -3.49 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -25.36 -7.54 -32.90 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084444845.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.358 kcal (2) G-P(sol) polarization free energy of solvation -25.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds