Wall clock time and date at job start Mon Mar 30 2020 02:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46618 * 2 1 4 4 H 1.09001 * 109.47186 * 304.54113 * 3 2 1 5 5 C 1.50701 * 109.46919 * 184.54215 * 3 2 1 6 6 H 1.07992 * 119.99653 * 240.00107 * 5 3 2 7 7 C 1.37877 * 120.00024 * 60.00344 * 5 3 2 8 8 N 1.31516 * 119.99862 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00037 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47436 * 119.99826 * 9 7 5 12 12 H 1.48505 * 109.46590 * 239.99756 * 9 7 5 13 13 N 1.46498 * 109.47280 * 64.54199 * 3 2 1 14 14 C 1.36343 * 125.63665 * 246.22394 * 13 3 2 15 15 C 1.50698 * 125.88989 * 359.95604 * 14 13 3 16 16 C 1.34858 * 108.21583 * 179.82707 * 14 13 3 17 17 C 1.40891 * 107.41589 * 0.42319 * 16 14 13 18 18 C 1.34844 * 107.41913 * 359.73684 * 17 16 14 19 19 C 1.50704 * 125.89045 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.46441 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47196 * 299.99476 * 1 2 3 22 22 H 1.08996 * 109.47253 * 60.00506 * 1 2 3 23 23 H 1.08997 * 109.46772 * 240.00371 * 2 1 3 24 24 H 1.08996 * 109.47253 * 119.99494 * 2 1 3 25 25 H 0.96999 * 119.99616 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.46737 * 84.90748 * 15 14 13 27 27 H 1.09000 * 109.47070 * 204.89814 * 15 14 13 28 28 H 1.08989 * 109.47197 * 324.90139 * 15 14 13 29 29 H 1.08002 * 126.28891 * 180.15444 * 16 14 13 30 30 H 1.08004 * 126.29055 * 179.73330 * 17 16 14 31 31 H 1.09001 * 109.47095 * 275.39083 * 19 18 17 32 32 H 1.09000 * 109.46930 * 35.39259 * 19 18 17 33 33 H 1.08998 * 109.46831 * 155.39315 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6117 1.9794 -0.8465 5 6 3.5427 1.4442 -0.1125 6 1 4.1421 1.8908 0.6669 7 6 4.1524 0.8754 -1.2106 8 7 3.4225 0.3311 -2.1596 9 14 6.0152 0.8767 -1.3497 10 1 6.6000 1.5451 -0.1595 11 1 6.5071 -0.5224 -1.4239 12 1 6.4193 1.6092 -2.5768 13 7 1.6429 2.1009 1.2471 14 6 0.7651 3.1388 1.3529 15 6 0.0406 3.8031 0.2107 16 6 0.6549 3.4664 2.6565 17 6 1.5029 2.6054 3.3808 18 6 2.0946 1.7807 2.4931 19 6 3.0847 0.6931 2.8214 20 1 -0.3632 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5137 0.8900 25 1 3.8515 -0.0687 -2.9323 26 1 -0.8656 3.2428 -0.0197 27 1 -0.2241 4.8223 0.4920 28 1 0.6874 3.8246 -0.6663 29 1 0.0342 4.2482 3.0688 30 1 1.6518 2.6059 4.4505 31 1 4.0854 1.1204 2.8867 32 1 2.8210 0.2378 3.7760 33 1 3.0639 -0.0655 2.0390 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681497.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:11 Heat of formation + Delta-G solvation = 25.765811 kcal Electronic energy + Delta-G solvation = -14157.809234 eV Core-core repulsion = 11990.662466 eV Total energy + Delta-G solvation = -2167.146768 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40917 -34.92644 -31.90750 -31.76660 -29.81943 -28.35982 -26.62932 -23.33348 -23.25373 -20.72043 -19.32858 -17.63999 -16.41913 -15.38075 -14.47499 -14.29436 -13.44973 -12.95461 -12.82934 -12.55879 -12.46037 -12.10492 -11.59671 -11.56139 -11.36635 -11.33580 -11.05515 -10.95396 -10.80782 -10.68533 -10.17887 -10.06403 -9.70578 -9.19403 -8.57861 -7.50852 -6.85891 -6.24995 -4.33195 3.17440 3.25507 3.27810 3.34017 3.85619 4.14633 4.34876 5.05987 5.76712 5.89571 6.01427 6.03100 6.14792 6.17309 6.19024 6.23741 6.35682 6.42628 6.45723 6.59418 6.69986 6.80159 6.88046 7.00661 7.17823 7.25891 7.41934 7.58048 7.76599 7.95993 8.03483 8.46186 8.53134 8.80309 9.34149 10.79919 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.031308 B = 0.012367 C = 0.011242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.137838 B = 2263.593075 C = 2490.151798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.256 3.744 4 H 0.054 0.946 5 C -0.527 4.527 6 H 0.067 0.933 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.901 3.099 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.402 5.402 14 C 0.003 3.997 15 C -0.077 4.077 16 C -0.220 4.220 17 C -0.233 4.233 18 C 0.037 3.963 19 C -0.080 4.080 20 H 0.037 0.963 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.265 0.735 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 1.165 4.240 5.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C 0.156 3.844 4 H 0.072 0.928 5 C -0.565 4.565 6 H 0.086 0.914 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.728 3.272 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 N -0.074 5.074 14 C -0.112 4.112 15 C -0.135 4.135 16 C -0.245 4.245 17 C -0.257 4.257 18 C -0.079 4.079 19 C -0.137 4.137 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.125 0.875 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.230 0.887 3.702 4.992 hybrid contribution 0.948 0.037 -0.141 0.959 sum -2.282 0.925 3.561 4.330 Atomic orbital electron populations 1.21817 0.98648 0.99662 1.00407 1.22035 0.92530 0.98969 1.03586 1.19286 0.95727 0.89931 0.79448 0.92823 1.21346 0.90093 1.38540 1.06512 0.91445 1.24887 0.98892 0.94657 0.95182 1.69864 1.35292 1.37819 1.09550 0.86375 0.84620 0.77897 0.78284 1.19533 1.20723 1.20806 1.44740 1.30573 1.24517 1.07558 1.20166 0.99849 0.95409 0.95749 1.20184 0.98789 0.98957 0.95557 1.20355 1.06956 1.04870 0.92317 1.20387 1.05592 1.02059 0.97685 1.20120 1.01983 1.01300 0.84466 1.20355 0.96281 0.96170 1.00897 0.94379 0.94007 0.93750 0.87509 0.93469 0.92485 0.92303 0.91510 0.91778 0.86443 0.86415 0.92036 0.92635 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.80 37.16 0.36 -2.60 16 2 C -0.13 -3.05 5.20 -26.73 -0.14 -3.19 16 3 C 0.26 6.21 2.13 -69.08 -0.15 6.06 16 4 H 0.05 1.40 6.72 -51.93 -0.35 1.05 16 5 C -0.53 -13.77 7.27 -34.44 -0.25 -14.02 16 6 H 0.07 1.82 6.99 -52.49 -0.37 1.45 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -23.65 11.29 55.43 0.63 -23.02 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.40 -9.14 2.04 -102.18 -0.21 -9.34 16 14 C 0.00 0.06 6.86 -81.79 -0.56 -0.51 16 15 C -0.08 -1.36 9.87 36.00 0.36 -1.01 16 16 C -0.22 -4.42 10.77 -39.78 -0.43 -4.85 16 17 C -0.23 -4.76 10.76 -39.78 -0.43 -5.19 16 18 C 0.04 0.80 6.25 -81.79 -0.51 0.29 16 19 C -0.08 -1.55 8.85 36.01 0.32 -1.24 16 20 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.84 7.71 -51.93 -0.40 0.44 16 22 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.11 2.68 5.96 -51.93 -0.31 2.37 16 24 H 0.05 1.07 5.55 -51.93 -0.29 0.78 16 25 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.19 7.21 -51.94 -0.37 0.81 16 29 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 30 H 0.12 2.12 8.06 -52.48 -0.42 1.69 16 31 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.65 4.91 -51.93 -0.26 1.39 16 LS Contribution 265.50 15.07 4.00 4.00 Total: -1.00 -27.14 265.50 -6.98 -34.12 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.86 Total: 3.39 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -1.52 Total: -24.60 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.42 Total: -32.37 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.14 -6.98 -34.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681497.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.890 kcal (2) G-P(sol) polarization free energy of solvation -27.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds