Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34850 * 125.88843 * 2 1 4 4 C 1.40894 * 107.41649 * 180.26479 * 3 2 1 5 5 C 1.34846 * 107.41755 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.89251 * 179.97438 * 5 4 3 7 7 N 1.36342 * 108.22051 * 0.02562 * 5 4 3 8 8 C 1.46494 * 125.63973 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47444 * 269.97770 * 8 7 5 10 10 C 1.53003 * 109.47487 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47247 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99881 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99710 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00275 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47421 * 89.99498 * 15 13 11 17 17 H 1.48492 * 109.47238 * 209.99745 * 15 13 11 18 18 H 1.48500 * 109.47051 * 329.99847 * 15 13 11 19 19 H 1.08998 * 109.47485 * 269.68888 * 1 2 3 20 20 H 1.09000 * 109.47556 * 29.69299 * 1 2 3 21 21 H 1.09008 * 109.46885 * 149.69048 * 1 2 3 22 22 H 1.08004 * 126.29266 * 0.26480 * 3 2 1 23 23 H 1.07995 * 126.28821 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.47042 * 270.04628 * 6 5 4 25 25 H 1.09001 * 109.47167 * 30.04422 * 6 5 4 26 26 H 1.09004 * 109.47212 * 150.04417 * 6 5 4 27 27 H 1.09006 * 109.47388 * 29.97563 * 8 7 5 28 28 H 1.09005 * 109.47482 * 149.96952 * 8 7 5 29 29 H 1.09009 * 109.46773 * 299.99709 * 9 8 7 30 30 H 1.08993 * 109.47307 * 59.99521 * 9 8 7 31 31 H 1.09000 * 109.46569 * 299.99784 * 10 9 8 32 32 H 1.08993 * 109.47373 * 59.99396 * 10 9 8 33 33 H 0.97001 * 119.99427 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0062 5 6 3.6090 -0.7021 -0.0092 6 6 4.8134 -1.6079 -0.0165 7 7 2.3063 -1.1045 -0.0056 8 6 1.8421 -2.4940 -0.0067 9 6 1.6752 -2.9749 -1.4494 10 6 1.1898 -4.4259 -1.4505 11 6 1.0248 -4.8994 -2.8717 12 1 1.2438 -4.2320 -3.6921 13 6 0.5942 -6.1845 -3.1245 14 7 0.4497 -6.5975 -4.3648 15 14 0.2147 -7.3386 -1.7056 16 1 -1.2137 -7.2007 -1.3237 17 1 0.4830 -8.7388 -2.1210 18 1 1.0731 -6.9938 -0.5439 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3634 0.8927 -0.5090 21 1 -0.3633 -0.8873 -0.5187 22 1 1.9670 2.1207 0.0040 23 1 4.5159 1.2692 -0.0082 24 1 5.0998 -1.8233 -1.0459 25 1 5.6407 -1.1166 0.4956 26 1 4.5708 -2.5391 0.4956 27 1 2.5730 -3.1217 0.5032 28 1 0.8848 -2.5577 0.5107 29 1 0.9442 -2.3473 -1.9593 30 1 2.6325 -2.9113 -1.9667 31 1 1.9204 -5.0537 -0.9405 32 1 0.2324 -4.4892 -0.9334 33 1 0.1465 -7.5016 -4.5426 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = 21.456442 kcal Electronic energy + Delta-G solvation = -13269.755855 eV Core-core repulsion = 11102.422219 eV Total energy + Delta-G solvation = -2167.333636 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.05173 -34.97692 -32.64089 -32.38614 -30.60209 -28.96065 -26.82868 -23.92293 -23.17701 -20.37780 -20.11960 -18.44579 -16.75699 -15.95582 -14.81959 -14.71512 -14.25579 -13.34865 -13.29235 -13.03525 -12.86232 -12.64504 -12.41384 -12.20749 -11.79353 -11.64727 -11.57153 -11.32183 -11.04041 -10.86887 -10.12150 -9.93438 -9.82445 -9.30081 -8.60980 -8.23917 -7.51999 -6.10653 -4.09840 2.52395 3.24653 3.26499 3.27724 3.32746 3.34479 4.38242 5.04586 5.06381 5.22902 5.26172 5.40582 5.47898 5.52423 5.68580 5.74419 5.79402 5.81050 5.96042 6.04270 6.07367 6.27465 6.44279 6.57836 6.63503 6.70310 7.14888 7.25827 7.36528 7.60618 7.67672 7.75503 8.46510 8.93896 9.50652 11.02749 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.043383 B = 0.007120 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.265668 B = 3931.664290 C = 4142.721453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.013 3.987 3 C -0.207 4.207 4 C -0.208 4.208 5 C 0.014 3.986 6 C -0.083 4.083 7 N -0.432 5.432 8 C 0.095 3.905 9 C -0.114 4.114 10 C -0.010 4.010 11 C -0.523 4.523 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.901 5.901 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 H 0.064 0.936 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.602 10.531 10.761 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.231 4.231 4 C -0.232 4.232 5 C -0.098 4.098 6 C -0.141 4.141 7 N -0.108 5.108 8 C -0.026 4.026 9 C -0.152 4.152 10 C -0.048 4.048 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.708 3.292 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 H 0.083 0.917 20 H 0.094 0.906 21 H 0.086 0.914 22 H 0.146 0.854 23 H 0.146 0.854 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.036 0.964 32 H 0.031 0.969 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.429 10.006 10.654 15.013 hybrid contribution -0.253 -0.699 0.549 0.925 sum 3.176 9.307 11.204 14.907 Atomic orbital electron populations 1.20298 0.88658 1.03295 1.02014 1.20305 0.93358 0.86037 1.10156 1.20543 0.92849 0.97055 1.12693 1.20535 0.97036 0.92851 1.12794 1.20307 0.84891 0.94538 1.10080 1.20283 0.93469 0.97676 1.02630 1.44215 1.05237 1.06122 1.55192 1.22156 1.00690 0.78968 1.00749 1.21834 1.01931 0.99099 0.92329 1.19521 0.95741 0.91131 0.98413 1.21075 1.45307 0.98519 0.91153 0.91012 1.25034 0.94871 0.98021 0.95507 1.69916 1.47076 1.18254 1.18749 0.86772 0.79092 0.80236 0.83135 1.20234 1.21262 1.19064 0.91679 0.90595 0.91377 0.85363 0.85365 0.91076 0.90794 0.91954 0.89836 0.89862 0.92109 0.92056 0.96441 0.96885 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.88 36.00 0.36 -0.73 16 2 C 0.01 0.21 6.89 -81.79 -0.56 -0.35 16 3 C -0.21 -3.13 10.76 -39.78 -0.43 -3.56 16 4 C -0.21 -3.14 10.76 -39.78 -0.43 -3.57 16 5 C 0.01 0.22 6.89 -81.79 -0.56 -0.35 16 6 C -0.08 -1.06 10.10 36.01 0.36 -0.70 16 7 N -0.43 -7.04 2.75 -107.98 -0.30 -7.34 16 8 C 0.10 1.54 5.50 -4.05 -0.02 1.52 16 9 C -0.11 -2.23 5.48 -26.73 -0.15 -2.38 16 10 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 11 C -0.52 -14.80 9.66 -34.44 -0.33 -15.14 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 14 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 15 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 19 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 20 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.07 0.92 7.71 -51.92 -0.40 0.52 16 22 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 23 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.77 7.05 -51.93 -0.37 0.40 16 27 H 0.08 1.26 7.02 -51.93 -0.36 0.89 16 28 H 0.08 1.25 7.64 -51.93 -0.40 0.85 16 29 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 32 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 275.83 15.07 4.16 4.16 Total: -1.00 -31.05 275.83 -7.27 -38.32 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.26 Total: -1.14 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -1.98 Total: -23.75 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.48 Total: -34.26 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.05 -7.27 -38.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.779 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds