Wall clock time and date at job start Mon Mar 30 2020 02:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34850 * 125.88843 * 2 1 4 4 C 1.40894 * 107.41649 * 180.26479 * 3 2 1 5 5 C 1.34846 * 107.41755 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.89251 * 179.97438 * 5 4 3 7 7 N 1.36342 * 108.22051 * 0.02562 * 5 4 3 8 8 C 1.46494 * 125.63973 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47444 * 269.97770 * 8 7 5 10 10 C 1.53003 * 109.47487 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47247 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00166 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99881 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99710 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00275 * 0.02562 * 13 11 10 16 16 H 1.48505 * 109.47421 * 89.99498 * 15 13 11 17 17 H 1.48492 * 109.47238 * 209.99745 * 15 13 11 18 18 H 1.48500 * 109.47051 * 329.99847 * 15 13 11 19 19 H 1.08998 * 109.47485 * 269.68888 * 1 2 3 20 20 H 1.09000 * 109.47556 * 29.69299 * 1 2 3 21 21 H 1.09008 * 109.46885 * 149.69048 * 1 2 3 22 22 H 1.08004 * 126.29266 * 0.26480 * 3 2 1 23 23 H 1.07995 * 126.28821 * 179.97438 * 4 3 2 24 24 H 1.08998 * 109.47042 * 270.04628 * 6 5 4 25 25 H 1.09001 * 109.47167 * 30.04422 * 6 5 4 26 26 H 1.09004 * 109.47212 * 150.04417 * 6 5 4 27 27 H 1.09006 * 109.47388 * 29.97563 * 8 7 5 28 28 H 1.09005 * 109.47482 * 149.96952 * 8 7 5 29 29 H 1.09009 * 109.46773 * 299.99709 * 9 8 7 30 30 H 1.08993 * 109.47307 * 59.99521 * 9 8 7 31 31 H 1.09000 * 109.46569 * 299.99784 * 10 9 8 32 32 H 1.08993 * 109.47373 * 59.99396 * 10 9 8 33 33 H 0.97001 * 119.99427 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2975 1.0925 0.0000 4 6 3.6338 0.6461 -0.0062 5 6 3.6090 -0.7021 -0.0092 6 6 4.8134 -1.6079 -0.0165 7 7 2.3063 -1.1045 -0.0056 8 6 1.8421 -2.4940 -0.0067 9 6 1.6752 -2.9749 -1.4494 10 6 1.1898 -4.4259 -1.4505 11 6 1.0248 -4.8994 -2.8717 12 1 1.2438 -4.2320 -3.6921 13 6 0.5942 -6.1845 -3.1245 14 7 0.4497 -6.5975 -4.3648 15 14 0.2147 -7.3386 -1.7056 16 1 -1.2137 -7.2007 -1.3237 17 1 0.4830 -8.7388 -2.1210 18 1 1.0731 -6.9938 -0.5439 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3634 0.8927 -0.5090 21 1 -0.3633 -0.8873 -0.5187 22 1 1.9670 2.1207 0.0040 23 1 4.5159 1.2692 -0.0082 24 1 5.0998 -1.8233 -1.0459 25 1 5.6407 -1.1166 0.4956 26 1 4.5708 -2.5391 0.4956 27 1 2.5730 -3.1217 0.5032 28 1 0.8848 -2.5577 0.5107 29 1 0.9442 -2.3473 -1.9593 30 1 2.6325 -2.9113 -1.9667 31 1 1.9204 -5.0537 -0.9405 32 1 0.2324 -4.4892 -0.9334 33 1 0.1465 -7.5016 -4.5426 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:05 Heat of formation + Delta-G solvation = 4.316896 kcal Electronic energy + Delta-G solvation = -13270.499082 eV Core-core repulsion = 11102.422219 eV Total energy + Delta-G solvation = -2168.076863 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.20085 -36.61435 -34.57510 -33.43973 -32.24335 -29.96587 -28.52680 -24.98586 -24.86089 -22.16898 -21.26029 -19.74123 -18.79440 -17.15062 -16.28330 -16.18320 -16.00033 -14.81305 -14.60671 -14.38678 -14.01934 -14.00965 -13.77564 -13.30872 -13.21861 -13.14424 -12.70495 -12.59925 -12.53383 -12.26861 -11.85805 -11.77945 -11.60022 -11.41542 -10.79476 -9.45287 -8.65358 -8.31936 -6.37926 1.35448 1.36064 1.38242 1.49851 2.10688 2.12949 2.34603 3.03405 3.80995 3.93478 4.09602 4.20575 4.32686 4.42378 4.51118 4.55952 4.69896 4.78590 4.80279 4.82788 4.91923 4.95428 5.10007 5.11709 5.39195 5.41386 5.48128 5.52929 5.60735 6.23120 6.25139 6.44781 6.57932 6.70460 7.26861 8.85232 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.043383 B = 0.007120 C = 0.006757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.265668 B = 3931.664290 C = 4142.721453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.005 4.005 3 C -0.219 4.219 4 C -0.219 4.219 5 C -0.005 4.005 6 C -0.082 4.082 7 N -0.444 5.444 8 C 0.105 3.895 9 C -0.101 4.101 10 C -0.006 4.006 11 C -0.538 4.538 12 H 0.024 0.976 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.955 3.045 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.239 1.239 19 H 0.082 0.918 20 H 0.089 0.911 21 H 0.056 0.944 22 H 0.146 0.854 23 H 0.146 0.854 24 H 0.065 0.935 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 10.561 13.352 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.243 4.243 4 C -0.243 4.243 5 C -0.117 4.117 6 C -0.139 4.139 7 N -0.121 5.121 8 C -0.016 4.016 9 C -0.139 4.139 10 C -0.044 4.044 11 C -0.576 4.576 12 H 0.042 0.958 13 C -0.194 4.194 14 N -0.593 5.593 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.211 1.211 18 H -0.162 1.162 19 H 0.101 0.899 20 H 0.108 0.892 21 H 0.075 0.925 22 H 0.164 0.836 23 H 0.164 0.836 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.445 10.070 13.255 16.999 hybrid contribution -0.224 -0.603 -0.371 0.742 sum 3.221 9.468 12.884 16.310 Atomic orbital electron populations 1.20361 0.87052 1.03445 1.03183 1.20843 0.94672 0.86075 1.10059 1.20896 0.93012 0.97958 1.12422 1.20894 0.97838 0.93128 1.12450 1.20840 0.85402 0.95374 1.10052 1.20352 0.93240 0.97680 1.02652 1.44300 1.05735 1.06101 1.55930 1.21970 1.02166 0.79475 0.97959 1.21597 1.00341 0.97074 0.94933 1.19442 0.96840 0.93082 0.94996 1.21444 1.45086 0.98217 0.92840 0.95781 1.26100 0.94533 1.00098 0.98708 1.70087 1.48573 1.19039 1.21647 0.85585 0.79781 0.77169 0.79681 1.18963 1.21106 1.16245 0.89910 0.89195 0.92485 0.83626 0.83627 0.91633 0.88525 0.91560 0.88257 0.88259 0.93694 0.93689 0.95239 0.95377 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 9.88 71.24 0.70 -1.26 16 2 C -0.01 -0.15 6.89 41.08 0.28 0.13 16 3 C -0.22 -6.24 10.76 22.14 0.24 -6.01 16 4 C -0.22 -6.25 10.76 22.14 0.24 -6.01 16 5 C -0.01 -0.16 6.89 41.08 0.28 0.13 16 6 C -0.08 -1.95 10.10 71.24 0.72 -1.23 16 7 N -0.44 -13.78 2.75 -495.55 -1.36 -15.14 16 8 C 0.11 3.19 5.50 86.38 0.48 3.67 16 9 C -0.10 -3.93 5.48 30.59 0.17 -3.76 16 10 C -0.01 -0.25 4.04 29.85 0.12 -0.13 16 11 C -0.54 -31.07 9.66 25.60 0.25 -30.83 16 12 H 0.02 1.56 7.99 -2.91 -0.02 1.53 16 13 C 0.00 0.13 5.47 84.65 0.46 0.60 16 14 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 15 Si 0.96 43.03 27.47 68.60 1.88 44.91 16 16 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 17 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 18 H -0.24 -9.69 6.54 99.48 0.65 -9.04 16 19 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 20 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 21 H 0.06 1.47 7.71 -2.38 -0.02 1.45 16 22 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 23 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 1.50 7.05 -2.38 -0.02 1.48 16 27 H 0.10 2.70 7.02 -2.38 -0.02 2.68 16 28 H 0.10 2.69 7.64 -2.38 -0.02 2.67 16 29 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 32 H 0.03 1.18 7.57 -2.39 -0.02 1.17 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -67.67 275.83 5.76 -61.91 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.00 Total: 12.74 kcal Atomic # 6 Polarization: -48.64 SS G_CDS: 3.94 Total: -44.71 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.06 Total: -74.86 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.91 kcal Total: -67.67 5.76 -61.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.228 kcal (2) G-P(sol) polarization free energy of solvation -67.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds