Wall clock time and date at job start Mon Mar 30 2020 02:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.36633 * 125.45738 * 299.35489 * 3 2 1 5 5 C 1.37615 * 113.26760 * 179.97438 * 4 3 2 6 6 C 1.50702 * 122.44687 * 180.02562 * 5 4 3 7 7 H 1.08995 * 109.47424 * 339.99770 * 6 5 4 8 8 N 1.46908 * 109.46582 * 220.00188 * 6 5 4 9 9 C 1.50699 * 109.47240 * 100.00487 * 6 5 4 10 10 H 1.08000 * 119.99610 * 359.97438 * 9 6 5 11 11 C 1.37870 * 120.00104 * 179.97438 * 9 6 5 12 12 N 1.31522 * 120.00163 * 359.97438 * 11 9 6 13 13 Si 1.86802 * 120.00077 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.46939 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46990 * 119.99931 * 13 11 9 16 16 H 1.48496 * 109.47202 * 239.99941 * 13 11 9 17 17 C 1.33707 * 115.09492 * 359.97438 * 5 4 3 18 18 S 1.70614 * 110.98055 * 0.02562 * 17 5 4 19 19 H 1.07992 * 123.36571 * 0.23016 * 4 3 2 20 20 H 1.00905 * 110.99497 * 176.05259 * 8 6 5 21 21 H 1.00905 * 110.99516 * 299.99919 * 8 6 5 22 22 H 0.96996 * 119.99741 * 179.97438 * 12 11 9 23 23 H 1.08007 * 124.50792 * 179.97438 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3608 -0.5446 0.9700 5 6 4.7059 -0.4020 0.7165 6 6 5.7649 -0.9278 1.6508 7 1 5.3334 -1.0810 2.6399 8 7 6.8639 0.0429 1.7411 9 6 6.2935 -2.2375 1.1250 10 1 5.9014 -2.6482 0.2063 11 6 7.2776 -2.9113 1.8166 12 7 7.7555 -2.4109 2.9351 13 14 7.9322 -4.5350 1.1652 14 1 7.2355 -4.8775 -0.1007 15 1 9.3902 -4.4143 0.9102 16 1 7.6919 -5.6037 2.1678 17 6 5.0042 0.2361 -0.4199 18 16 3.5876 0.7022 -1.2488 19 1 2.9709 -1.0416 1.8460 20 1 7.5567 -0.2565 2.4108 21 1 7.2808 0.2022 0.8361 22 1 8.4475 -2.8852 3.4219 23 1 6.0083 0.4314 -0.7666 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104512367.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:53 Heat of formation + Delta-G solvation = 52.858102 kcal Electronic energy + Delta-G solvation = -10758.837678 eV Core-core repulsion = 8698.526491 eV Total energy + Delta-G solvation = -2060.311187 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.19788 -36.28677 -34.04628 -31.31566 -28.97271 -26.39278 -24.64075 -22.21976 -18.71352 -18.42104 -16.63606 -15.79453 -15.09143 -14.35892 -13.88090 -13.54184 -12.99968 -12.96359 -12.59180 -12.24710 -12.02070 -11.50105 -11.25599 -11.00569 -10.86428 -10.63538 -10.05472 -9.74786 -8.74545 -8.37056 -7.91735 -7.27897 -6.17694 -4.34573 0.90423 1.58937 2.33019 2.98603 3.13969 3.16495 3.26163 3.30481 3.64146 4.23143 4.28517 5.05554 5.64451 5.80779 5.91633 6.31771 6.65395 6.77184 6.86232 7.55603 7.65792 7.66895 7.98913 8.57338 8.83501 9.01450 9.37837 10.80017 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.044178 B = 0.008559 C = 0.008198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.643053 B = 3270.759079 C = 3414.509278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C 0.298 3.702 3 C -0.192 4.192 4 C -0.034 4.034 5 C -0.064 4.064 6 C 0.258 3.742 7 H 0.050 0.950 8 N -0.849 5.849 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.067 3.933 12 N -0.892 5.892 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.282 1.282 17 C -0.211 4.211 18 S 0.182 5.818 19 H 0.148 0.852 20 H 0.357 0.643 21 H 0.310 0.690 22 H 0.266 0.734 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 4.180 -5.633 7.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.017 4.017 3 C -0.312 4.312 4 C -0.072 4.072 5 C -0.075 4.075 6 C 0.146 3.854 7 H 0.068 0.932 8 N -0.379 5.379 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.136 4.136 12 N -0.531 5.531 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.208 1.208 17 C -0.348 4.348 18 S 0.449 5.551 19 H 0.166 0.834 20 H 0.174 0.826 21 H 0.120 0.880 22 H 0.076 0.924 23 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.247 5.451 -6.615 10.050 hybrid contribution 1.892 -2.619 0.743 3.315 sum -3.355 2.833 -5.872 7.332 Atomic orbital electron populations 1.81220 1.11369 1.10341 1.08386 1.24427 0.91074 0.92815 0.93352 1.20189 0.88616 1.17562 1.04858 1.20752 0.92342 0.96318 0.97822 1.19256 0.94596 0.97091 0.96583 1.17749 0.86696 0.88245 0.92694 0.93181 1.59517 1.16430 1.49449 1.12472 1.21869 1.20925 1.06459 1.09267 0.92363 1.25021 0.96298 0.97845 0.94462 1.69744 1.28569 1.39369 1.15464 0.86459 0.78622 0.83393 0.79087 1.19694 1.20930 1.20822 1.24963 1.02783 1.06887 1.00208 1.82701 0.94913 1.55315 1.22192 0.83400 0.82612 0.88047 0.92405 0.81512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.51 18.54 41.84 0.78 -6.73 14 2 C 0.30 4.80 15.83 -22.47 -0.36 4.44 14 3 C -0.19 -3.02 6.32 -38.24 -0.24 -3.26 14 4 C -0.03 -0.58 10.00 -40.39 -0.40 -0.99 14 5 C -0.06 -1.21 4.78 -106.44 -0.51 -1.72 14 6 C 0.26 5.87 3.03 -70.01 -0.21 5.66 14 7 H 0.05 1.25 8.08 -51.93 -0.42 0.83 14 8 N -0.85 -18.54 9.04 -6.65 -0.06 -18.60 14 9 C -0.55 -13.62 8.71 -34.44 -0.30 -13.92 14 10 H 0.06 1.48 7.74 -52.49 -0.41 1.07 14 11 C 0.07 1.69 5.38 -17.82 -0.10 1.60 14 12 N -0.89 -23.36 11.54 55.43 0.64 -22.72 14 13 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 14 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 14 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 14 16 H -0.28 -6.35 7.11 56.52 0.40 -5.94 14 17 C -0.21 -3.48 10.12 29.14 0.30 -3.18 14 18 S 0.18 2.52 23.07 -107.50 -2.48 0.04 14 19 H 0.15 2.38 8.06 -52.49 -0.42 1.96 14 20 H 0.36 8.50 7.08 -39.29 -0.28 8.22 14 21 H 0.31 6.32 7.70 -39.29 -0.30 6.02 14 22 H 0.27 6.68 8.31 -40.82 -0.34 6.34 14 23 H 0.17 2.60 7.13 -52.48 -0.37 2.23 14 LS Contribution 231.30 15.07 3.49 3.49 Total: -1.00 -25.94 231.30 -5.82 -31.76 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -1.34 Total: 9.14 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -1.82 Total: -11.37 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 1.35 Total: -48.05 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.48 Total: 0.04 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -25.94 -5.82 -31.76 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104512367.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.621 kcal (2) G-P(sol) polarization free energy of solvation -25.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds