Wall clock time and date at job start Mon Mar 30 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46940 * 111.00262 * 2 1 4 4 C 1.53544 * 109.78100 * 164.46839 * 3 2 1 5 5 C 1.50780 * 107.80324 * 49.24822 * 4 3 2 6 6 N 1.34935 * 129.65991 * 164.03833 * 5 4 3 7 7 H 0.96996 * 124.97734 * 0.17017 * 6 5 4 8 8 N 1.28931 * 110.05713 * 179.97438 * 6 5 4 9 9 C 1.33215 * 110.02713 * 0.37664 * 8 6 5 10 10 C 1.41422 * 126.72987 * 179.80180 * 9 8 6 11 11 H 1.07995 * 120.00051 * 179.97438 * 10 9 8 12 12 C 1.39855 * 119.99823 * 359.68974 * 10 9 8 13 13 N 1.30891 * 119.99866 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99718 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47228 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46793 * 120.00089 * 14 12 10 17 17 H 1.48500 * 109.47000 * 240.00181 * 14 12 10 18 18 C 1.35519 * 122.92325 * 344.11326 * 5 4 3 19 19 C 1.47396 * 111.00101 * 235.43212 * 2 1 3 20 20 H 1.09003 * 109.47036 * 63.95162 * 1 2 3 21 21 H 1.09001 * 109.47544 * 183.95623 * 1 2 3 22 22 H 1.08999 * 109.47310 * 303.95353 * 1 2 3 23 23 H 1.09000 * 109.41573 * 44.37268 * 3 2 1 24 24 H 1.09001 * 109.36653 * 284.53471 * 3 2 1 25 25 H 1.09006 * 109.79568 * 289.66941 * 4 3 2 26 26 H 1.09004 * 109.79491 * 168.82734 * 4 3 2 27 27 H 0.97000 * 119.99409 * 180.02562 * 13 12 10 28 28 H 1.09009 * 109.69934 * 55.43892 * 19 2 1 29 29 H 1.09007 * 109.74105 * 294.79168 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3718 0.0000 4 6 3.4815 1.3580 0.3869 5 6 4.1687 0.3167 -0.4598 6 7 5.4838 0.1315 -0.6983 7 1 6.1975 0.6762 -0.3314 8 7 5.6532 -0.8782 -1.4820 9 6 4.4741 -1.4054 -1.8082 10 6 4.2494 -2.5190 -2.6505 11 1 3.2417 -2.8568 -2.8418 12 6 5.3321 -3.1791 -3.2405 13 7 6.5532 -2.7666 -3.0127 14 14 5.0354 -4.6505 -4.3526 15 1 3.5770 -4.9135 -4.4469 16 1 5.5749 -4.3645 -5.7062 17 1 5.7184 -5.8426 -3.7890 18 6 3.4939 -0.6396 -1.1431 19 6 1.9972 -0.7807 -1.1331 20 1 -0.3633 0.4513 -0.9233 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3634 0.5740 0.8524 23 1 1.4395 1.9734 0.7189 24 1 1.8843 1.8017 -0.9954 25 1 3.5859 1.1037 1.4417 26 1 3.9214 2.3371 0.1972 27 1 7.3040 -3.2242 -3.4222 28 1 1.5854 -0.3978 -2.0669 29 1 1.7275 -1.8303 -1.0146 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107291683.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:07 Heat of formation + Delta-G solvation = 47.950635 kcal Electronic energy + Delta-G solvation = -13514.981794 eV Core-core repulsion = 11245.256688 eV Total energy + Delta-G solvation = -2269.725105 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.46363 -38.59651 -35.39292 -33.13223 -32.46805 -30.04443 -27.79515 -27.05817 -24.52686 -23.03790 -21.90784 -19.58891 -18.23821 -18.12002 -16.47622 -16.28066 -15.87032 -15.39526 -15.11187 -14.76387 -14.14231 -13.91535 -13.35736 -12.98660 -12.87643 -12.72247 -12.49690 -12.48891 -12.00911 -11.98495 -11.45170 -11.18500 -10.32277 -9.52968 -9.17828 -8.85227 -8.27755 -6.22151 1.39742 1.42644 1.58399 1.74009 2.34827 2.39785 2.90355 3.09724 3.64053 3.98667 4.22559 4.37727 4.53175 4.55935 4.71625 4.75310 4.83004 4.87705 4.93303 5.07467 5.16917 5.34211 5.51924 5.64130 5.89717 6.20868 6.32808 6.46909 7.00813 7.06044 7.32882 8.34574 8.72897 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.042360 B = 0.010319 C = 0.008418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.845711 B = 2712.909819 C = 3325.376089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.557 5.557 3 C 0.066 3.934 4 C -0.032 4.032 5 C 0.006 3.994 6 N -0.430 5.430 7 H 0.431 0.569 8 N -0.376 5.376 9 C 0.166 3.834 10 C -0.483 4.483 11 H 0.078 0.922 12 C 0.021 3.979 13 N -0.826 5.826 14 Si 0.983 3.017 15 H -0.255 1.255 16 H -0.271 1.271 17 H -0.272 1.272 18 C -0.299 4.299 19 C 0.166 3.834 20 H 0.026 0.974 21 H 0.067 0.933 22 H 0.090 0.910 23 H 0.112 0.888 24 H 0.026 0.974 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.270 0.730 28 H 0.021 0.979 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 6.932 5.106 12.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.281 5.281 3 C -0.063 4.063 4 C -0.071 4.071 5 C -0.124 4.124 6 N -0.136 5.136 7 H 0.273 0.727 8 N -0.210 5.210 9 C 0.016 3.984 10 C -0.522 4.522 11 H 0.096 0.904 12 C -0.192 4.192 13 N -0.455 5.455 14 Si 0.805 3.195 15 H -0.179 1.179 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.311 4.311 19 C 0.037 3.963 20 H 0.045 0.955 21 H 0.086 0.914 22 H 0.109 0.891 23 H 0.130 0.870 24 H 0.045 0.955 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.343 6.586 5.345 11.219 hybrid contribution -0.331 -0.130 -1.104 1.160 sum -7.675 6.456 4.241 10.889 Atomic orbital electron populations 1.22415 0.85653 1.02755 1.01220 1.61953 1.08817 1.14023 1.43356 1.22110 0.94657 0.89052 1.00456 1.20312 0.93860 0.95119 0.97812 1.21531 0.85466 1.01648 1.03745 1.43225 1.05732 1.25720 1.38917 0.72682 1.74911 1.24328 1.04854 1.16915 1.19341 0.87615 0.95465 0.95983 1.18895 0.94178 1.11855 1.27239 0.90374 1.26705 0.94233 1.00724 0.97539 1.70113 0.99607 1.38150 1.37671 0.85152 0.79522 0.77265 0.77605 1.17880 1.19666 1.19679 1.20191 0.96091 1.03749 1.11114 1.19862 0.89228 0.97036 0.90168 0.95549 0.91447 0.89107 0.87039 0.95537 0.89407 0.88549 0.92000 0.96099 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.58 127.69 1.22 1.88 15 2 N -0.56 -18.21 4.88 -925.13 -4.52 -22.73 15 3 C 0.07 1.81 5.51 86.48 0.48 2.29 15 4 C -0.03 -0.95 6.52 30.06 0.20 -0.75 15 5 C 0.01 0.28 7.22 41.48 0.30 0.58 15 6 N -0.43 -20.28 6.85 -47.83 -0.33 -20.61 15 7 H 0.43 16.54 8.96 -219.76 -1.97 14.57 15 8 N -0.38 -22.21 10.54 -52.15 -0.55 -22.76 15 9 C 0.17 9.89 6.76 40.41 0.27 10.17 15 10 C -0.48 -28.91 9.36 23.45 0.22 -28.69 15 11 H 0.08 4.43 7.84 -2.91 -0.02 4.41 15 12 C 0.02 1.22 5.49 85.22 0.47 1.69 15 13 N -0.83 -49.83 11.98 21.81 0.26 -49.57 15 14 Si 0.98 42.92 29.56 68.60 2.03 44.95 15 15 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 16 H -0.27 -11.40 7.11 99.48 0.71 -10.70 15 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 18 C -0.30 -15.05 6.09 -19.92 -0.12 -15.17 15 19 C 0.17 6.92 5.79 85.35 0.49 7.41 15 20 H 0.03 0.61 8.14 -2.39 -0.02 0.59 15 21 H 0.07 1.60 8.14 -2.39 -0.02 1.59 15 22 H 0.09 1.68 8.00 -2.39 -0.02 1.66 15 23 H 0.11 2.19 7.90 -2.39 -0.02 2.18 15 24 H 0.03 0.77 8.07 -2.39 -0.02 0.76 15 25 H 0.09 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.10 2.29 8.14 -2.38 -0.02 2.27 15 27 H 0.27 14.94 8.30 -92.71 -0.77 14.17 15 28 H 0.02 0.88 8.14 -2.38 -0.02 0.86 15 29 H 0.06 2.62 8.14 -2.38 -0.02 2.60 15 Total: -1.00 -74.22 245.41 -0.39 -74.61 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -0.81 Total: 16.69 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 3.53 Total: -20.60 kcal Atomic # 7 Polarization: -110.53 SS G_CDS: -5.13 Total: -115.66 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -74.22 -0.39 -74.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107291683.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.564 kcal (2) G-P(sol) polarization free energy of solvation -74.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds