Wall clock time and date at job start Mon Mar 30 2020 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 N 1.33210 * 119.46964 * 28.73015 * 3 2 1 5 5 C 1.31075 * 121.74599 * 179.74988 * 4 3 2 6 6 C 1.41154 * 120.44867 * 0.52189 * 5 4 3 7 7 C 1.40973 * 120.53826 * 179.76209 * 6 5 4 8 8 H 1.07999 * 120.00538 * 335.63392 * 7 6 5 9 9 C 1.40224 * 119.99917 * 155.62731 * 7 6 5 10 10 N 1.30660 * 120.00130 * 343.31930 * 9 7 6 11 11 Si 1.86804 * 119.99864 * 163.31204 * 9 7 6 12 12 H 1.48499 * 109.47082 * 90.00205 * 11 9 7 13 13 H 1.48505 * 109.46822 * 210.00254 * 11 9 7 14 14 H 1.48497 * 109.47279 * 330.00080 * 11 9 7 15 15 C 1.41188 * 118.92457 * 359.74643 * 6 5 4 16 16 C 1.36863 * 118.39908 * 359.97438 * 15 6 5 17 17 Cl 1.73598 * 120.28998 * 179.97438 * 16 15 6 18 18 H 1.07997 * 119.77430 * 180.24574 * 5 4 3 19 19 H 0.97004 * 119.99985 * 180.02562 * 10 9 7 20 20 H 1.08001 * 120.80543 * 180.02562 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 7 3.2239 -1.0160 -0.5575 5 6 4.5336 -1.0588 -0.5868 6 6 5.2963 -0.0199 -0.0110 7 6 6.7050 -0.0663 -0.0371 8 1 7.2126 -1.0158 -0.1223 9 6 7.4473 1.1203 0.0476 10 7 6.8686 2.2703 -0.1758 11 14 9.2635 1.0569 0.4799 12 1 10.0647 0.9370 -0.7647 13 1 9.6454 2.3003 1.1966 14 1 9.5243 -0.1167 1.3515 15 6 4.6254 1.0668 0.5910 16 6 3.2567 1.0677 0.5908 17 17 2.3819 2.3789 1.3181 18 1 5.0326 -1.8967 -1.0506 19 1 7.3823 3.0911 -0.1176 20 1 5.1788 1.8782 1.0402 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115024496.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:27 Heat of formation + Delta-G solvation = 21.730779 kcal Electronic energy + Delta-G solvation = -10582.160207 eV Core-core repulsion = 8382.622436 eV Total energy + Delta-G solvation = -2199.537770 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 208.010 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.51865 -37.51384 -37.28274 -36.15073 -32.71983 -32.09593 -28.30598 -24.59732 -23.68651 -20.07175 -19.54647 -17.61328 -16.98313 -16.09508 -15.46924 -15.40298 -14.50904 -13.87829 -13.85599 -13.63523 -13.54304 -13.25838 -12.91846 -12.81301 -12.53426 -12.05693 -11.79587 -11.30376 -10.38525 -10.20038 -9.66899 -8.94315 -6.67450 0.07953 0.81618 1.23461 1.43658 1.48724 1.63030 1.78117 2.04316 2.15967 2.70369 3.09469 3.49990 4.37021 4.50721 4.59870 4.90090 4.99600 5.23732 5.63966 5.68842 6.20914 6.43397 6.44118 6.64977 7.36328 7.96151 Molecular weight = 208.01amu Principal moments of inertia in cm(-1) A = 0.049519 B = 0.010096 C = 0.008577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.303362 B = 2772.675437 C = 3263.835862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.308 3.692 3 C -0.027 4.027 4 N -0.424 5.424 5 C -0.003 4.003 6 C 0.057 3.943 7 C -0.403 4.403 8 H 0.119 0.881 9 C 0.032 3.968 10 N -0.775 5.775 11 Si 0.995 3.005 12 H -0.257 1.257 13 H -0.268 1.268 14 H -0.248 1.248 15 C -0.159 4.159 16 C 0.005 3.995 17 Cl -0.084 7.084 18 H 0.172 0.828 19 H 0.306 0.694 20 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 0.621 1.909 7.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.004 4.004 3 C -0.161 4.161 4 N -0.133 5.133 5 C -0.175 4.175 6 C 0.051 3.949 7 C -0.430 4.430 8 H 0.137 0.863 9 C -0.191 4.191 10 N -0.396 5.396 11 Si 0.814 3.186 12 H -0.181 1.181 13 H -0.193 1.193 14 H -0.172 1.172 15 C -0.184 4.184 16 C -0.026 4.026 17 Cl -0.055 7.055 18 H 0.189 0.811 19 H 0.118 0.882 20 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.919 0.389 1.605 5.188 hybrid contribution 1.228 1.068 0.487 1.699 sum 6.147 1.457 2.092 6.655 Atomic orbital electron populations 1.81015 1.12181 1.10200 1.13125 1.25247 0.91951 0.91710 0.91478 1.15418 0.84994 0.97338 1.18311 1.66972 1.12018 1.21740 1.12569 1.23028 0.87275 1.02075 1.05124 1.18931 0.95531 0.91394 0.89060 1.20422 0.90574 0.96171 1.35796 0.86278 1.27188 1.07065 0.93761 0.91067 1.69716 1.41833 1.00819 1.27223 0.84949 0.73943 0.79829 0.79852 1.18140 1.19290 1.17151 1.21287 0.90018 1.02684 1.04386 1.21305 0.93133 0.89254 0.98905 1.98292 1.76840 1.48364 1.82045 0.81136 0.88171 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.35 18.54 19.01 0.35 -22.00 14 2 C 0.31 14.18 14.55 88.33 1.29 15.47 14 3 C -0.03 -1.27 6.61 40.63 0.27 -1.00 14 4 N -0.42 -19.39 10.26 -186.62 -1.91 -21.30 14 5 C 0.00 -0.13 10.97 85.52 0.94 0.81 14 6 C 0.06 2.52 5.59 -21.17 -0.12 2.41 14 7 C -0.40 -16.17 9.07 23.42 0.21 -15.95 14 8 H 0.12 4.21 7.90 -2.91 -0.02 4.18 14 9 C 0.03 1.23 5.19 85.35 0.44 1.67 14 10 N -0.77 -31.72 10.90 21.87 0.24 -31.48 14 11 Si 1.00 28.12 29.59 68.60 2.03 30.15 14 12 H -0.26 -7.06 7.11 99.48 0.71 -6.36 14 13 H -0.27 -7.50 7.11 99.48 0.71 -6.79 14 14 H -0.25 -6.81 7.11 99.48 0.71 -6.10 14 15 C -0.16 -7.20 8.52 22.67 0.19 -7.01 14 16 C 0.01 0.25 6.32 22.39 0.14 0.39 14 17 Cl -0.08 -3.36 28.01 -2.72 -0.08 -3.44 14 18 H 0.17 6.08 8.06 -2.91 -0.02 6.06 14 19 H 0.31 11.11 8.29 -92.71 -0.77 10.35 14 20 H 0.14 6.28 6.20 -2.91 -0.02 6.26 14 Total: -1.00 -48.97 215.89 5.28 -43.69 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.29 Total: 7.60 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 3.36 Total: -3.23 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.32 Total: -74.78 kcal Atomic # 14 Polarization: 28.12 SS G_CDS: 2.03 Total: 30.15 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.08 Total: -3.44 kcal Total: -48.97 5.28 -43.69 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115024496.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.424 kcal (2) G-P(sol) polarization free energy of solvation -48.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds