Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46896 * 110.99827 * 2 1 4 4 C 1.50694 * 109.47399 * 66.04534 * 3 2 1 5 5 H 1.08001 * 120.00243 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00219 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99957 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00123 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47078 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47235 * 120.00493 * 8 6 4 11 11 H 1.48500 * 109.46842 * 240.00110 * 8 6 4 12 12 C 1.40012 * 110.99830 * 236.04211 * 2 1 3 13 13 C 1.38860 * 120.51014 * 63.95961 * 12 2 1 14 14 C 1.38843 * 118.43896 * 180.02562 * 13 12 2 15 15 C 1.38010 * 119.38395 * 0.25074 * 14 13 12 16 16 N 1.32049 * 120.98971 * 359.45129 * 15 14 13 17 17 C 1.32259 * 121.69518 * 0.58749 * 16 15 14 18 18 N 1.39290 * 119.73976 * 179.70744 * 17 16 15 19 19 H 1.09001 * 109.46898 * 183.95787 * 1 2 3 20 20 H 1.09001 * 109.46821 * 303.95361 * 1 2 3 21 21 H 1.08998 * 109.47009 * 63.95733 * 1 2 3 22 22 H 1.09002 * 109.46725 * 186.04662 * 3 2 1 23 23 H 1.09003 * 109.47010 * 306.04328 * 3 2 1 24 24 H 0.97006 * 120.00555 * 179.97438 * 7 6 4 25 25 H 1.07995 * 120.78090 * 359.97438 * 13 12 2 26 26 H 1.08002 * 120.30473 * 179.97438 * 14 13 12 27 27 H 1.07994 * 119.50198 * 179.74738 * 15 14 13 28 28 H 0.97006 * 119.99582 * 179.97438 * 18 17 16 29 29 H 0.97002 * 120.00395 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0747 1.5113 2.0488 6 6 2.0277 3.3491 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5839 4.1865 3.1386 9 1 0.8166 3.2439 3.9918 10 1 2.8258 4.5932 3.8439 11 1 0.7569 5.3880 2.8599 12 6 1.9708 -0.7301 -1.0842 13 6 1.7331 -0.3113 -2.3866 14 6 2.2504 -1.0682 -3.4294 15 6 2.9750 -2.2077 -3.1444 16 7 3.1918 -2.5813 -1.8966 17 6 2.7179 -1.8916 -0.8724 18 7 2.9660 -2.3262 0.4274 19 1 -0.3633 -1.0252 0.0709 20 1 -0.3633 0.5740 0.8525 21 1 -0.3633 0.4512 -0.9233 22 1 3.0797 1.3443 -0.1083 23 1 1.5611 1.9273 -0.8310 24 1 2.9874 4.9177 0.7772 25 1 1.1586 0.5816 -2.5839 26 1 2.0834 -0.7704 -4.4540 27 1 3.3748 -2.8000 -3.9541 28 1 2.6205 -1.8230 1.1814 29 1 3.4843 -3.1321 0.5788 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122660785.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 22.732684 kcal Electronic energy + Delta-G solvation = -13297.855459 eV Core-core repulsion = 11027.036821 eV Total energy + Delta-G solvation = -2270.818638 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.28332 -38.02864 -35.42613 -34.73768 -32.21823 -29.96281 -29.04893 -26.75310 -24.78755 -23.47696 -22.03813 -18.80981 -18.27761 -18.05410 -17.12245 -16.61000 -15.89682 -15.62887 -15.27660 -14.78009 -14.60516 -14.21224 -13.99201 -13.32326 -13.10413 -12.84308 -12.59564 -12.38254 -12.05782 -11.65939 -11.43423 -10.64941 -10.49110 -10.44360 -9.22335 -8.56044 -8.21239 -6.32733 0.34048 0.58614 1.41896 1.42741 1.56153 2.39646 2.77859 3.02197 3.11089 3.20516 3.88280 4.10429 4.33848 4.41310 4.61886 4.68213 4.70233 5.02230 5.04920 5.20908 5.24609 5.43954 5.62314 5.74513 6.02699 6.17343 6.37923 6.72329 6.82317 6.83252 7.37433 7.43429 8.89725 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.048551 B = 0.008426 C = 0.008037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.570914 B = 3322.184681 C = 3483.097181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.498 5.498 3 C 0.220 3.780 4 C -0.522 4.522 5 H 0.070 0.930 6 C 0.002 3.998 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.259 1.259 10 H -0.281 1.281 11 H -0.280 1.280 12 C -0.041 4.041 13 C -0.082 4.082 14 C -0.225 4.225 15 C 0.134 3.866 16 N -0.559 5.559 17 C 0.406 3.594 18 N -0.833 5.833 19 H 0.070 0.930 20 H 0.069 0.931 21 H 0.015 0.985 22 H -0.008 1.008 23 H -0.032 1.032 24 H 0.264 0.736 25 H 0.117 0.883 26 H 0.157 0.843 27 H 0.192 0.808 28 H 0.417 0.583 29 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -10.401 -4.138 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.220 5.220 3 C 0.095 3.905 4 C -0.561 4.561 5 H 0.089 0.911 6 C -0.196 4.196 7 N -0.577 5.577 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.207 1.207 11 H -0.206 1.206 12 C -0.142 4.142 13 C -0.110 4.110 14 C -0.249 4.249 15 C -0.023 4.023 16 N -0.279 5.279 17 C 0.167 3.833 18 N -0.377 5.377 19 H 0.089 0.911 20 H 0.088 0.912 21 H 0.034 0.966 22 H 0.010 0.990 23 H -0.014 1.014 24 H 0.073 0.927 25 H 0.135 0.865 26 H 0.174 0.826 27 H 0.208 0.792 28 H 0.249 0.751 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.519 -11.197 -3.547 11.843 hybrid contribution -0.679 1.993 0.047 2.106 sum -2.198 -9.204 -3.499 10.089 Atomic orbital electron populations 1.22253 0.86250 1.01140 1.00447 1.59591 1.08376 1.15257 1.38733 1.19368 0.92969 0.82724 0.95471 1.21494 1.34932 0.97461 1.02176 0.91138 1.25936 0.94895 0.98095 1.00710 1.70108 1.39332 1.11909 1.36306 0.85292 0.77970 0.78228 0.78856 1.18285 1.20689 1.20553 1.19495 1.06020 0.97838 0.90862 1.22048 0.97010 0.98554 0.93360 1.21988 1.04302 0.98231 1.00336 1.22938 0.92887 0.93912 0.92559 1.67266 1.26541 1.34045 1.00000 1.18443 0.89300 0.88265 0.87330 1.42170 1.60903 1.31527 1.03096 0.91135 0.91176 0.96593 0.98996 1.01420 0.92699 0.86515 0.82584 0.79163 0.75146 0.76404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.77 9.21 127.69 1.18 2.95 15 2 N -0.50 -21.59 3.90 -723.33 -2.82 -24.41 15 3 C 0.22 11.75 4.32 85.56 0.37 12.12 15 4 C -0.52 -29.00 8.46 25.60 0.22 -28.78 15 5 H 0.07 3.76 7.12 -2.91 -0.02 3.74 15 6 C 0.00 0.09 5.46 84.66 0.46 0.56 15 7 N -0.94 -56.34 13.29 21.45 0.28 -56.05 15 8 Si 0.97 43.58 29.54 68.60 2.03 45.61 15 9 H -0.26 -10.99 7.11 99.48 0.71 -10.29 15 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 12 C -0.04 -1.62 4.72 38.34 0.18 -1.44 15 13 C -0.08 -2.98 8.80 22.56 0.20 -2.79 15 14 C -0.23 -6.48 10.10 22.36 0.23 -6.25 15 15 C 0.13 3.67 11.17 84.61 0.94 4.62 15 16 N -0.56 -18.46 10.39 -192.63 -2.00 -20.46 15 17 C 0.41 14.74 7.77 133.15 1.04 15.77 15 18 N -0.83 -26.03 9.08 -54.96 -0.50 -26.52 15 19 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 20 H 0.07 2.79 6.76 -2.39 -0.02 2.78 15 21 H 0.02 0.59 7.41 -2.39 -0.02 0.58 15 22 H -0.01 -0.49 8.06 -2.39 -0.02 -0.51 15 23 H -0.03 -1.84 7.55 -2.39 -0.02 -1.86 15 24 H 0.26 14.92 8.31 -92.70 -0.77 14.15 15 25 H 0.12 4.38 7.29 -2.91 -0.02 4.36 15 26 H 0.16 3.38 8.06 -2.91 -0.02 3.36 15 27 H 0.19 3.51 8.06 -2.91 -0.02 3.49 15 28 H 0.42 13.44 8.09 -92.70 -0.75 12.69 15 29 H 0.41 10.42 8.95 -92.71 -0.83 9.59 15 Total: -1.00 -65.35 251.30 1.39 -63.96 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.41 Total: 21.13 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 4.81 Total: -3.25 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.03 Total: -127.45 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -65.35 1.39 -63.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122660785.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.694 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds