Wall clock time and date at job start Mon Mar 30 2020 02:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47202 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47306 * 47.01692 * 4 3 2 6 6 N 1.46890 * 109.47382 * 184.84432 * 5 4 3 7 7 C 1.46893 * 111.00428 * 184.29621 * 6 5 4 8 8 C 1.53006 * 109.47647 * 185.66617 * 7 6 5 9 9 C 1.50705 * 115.54619 * 304.98818 * 8 7 6 10 10 H 1.07995 * 119.99910 * 274.71154 * 9 8 7 11 11 C 1.37878 * 119.99879 * 94.44019 * 9 8 7 12 12 N 1.31510 * 119.99733 * 180.28509 * 11 9 8 13 13 Si 1.86800 * 119.99916 * 0.28693 * 11 9 8 14 14 H 1.48506 * 109.47060 * 94.25975 * 13 11 9 15 15 H 1.48494 * 109.47220 * 214.25644 * 13 11 9 16 16 H 1.48500 * 109.47142 * 334.26144 * 13 11 9 17 17 C 1.52999 * 117.49874 * 90.65558 * 8 7 6 18 18 C 1.52996 * 117.50190 * 159.31769 * 8 7 6 19 19 H 1.09005 * 109.47113 * 312.97806 * 1 2 3 20 20 H 1.08990 * 109.47231 * 72.97976 * 1 2 3 21 21 H 1.09002 * 109.46791 * 192.98270 * 1 2 3 22 22 H 1.09004 * 109.46727 * 287.01723 * 4 3 2 23 23 H 1.08997 * 109.47132 * 167.02072 * 4 3 2 24 24 H 1.09002 * 109.46884 * 64.84354 * 5 4 3 25 25 H 1.08999 * 109.47307 * 304.84684 * 5 4 3 26 26 H 1.00903 * 111.00145 * 308.25520 * 6 5 4 27 27 H 1.09005 * 109.47226 * 65.66662 * 7 6 5 28 28 H 1.09003 * 109.47374 * 305.66807 * 7 6 5 29 29 H 0.97008 * 119.99400 * 179.97438 * 12 11 9 30 30 H 1.08994 * 117.50125 * 215.00733 * 17 8 7 31 31 H 1.08997 * 117.49823 * 0.02599 * 17 8 7 32 32 H 1.09011 * 117.49717 * 359.97438 * 18 8 7 33 33 H 1.08999 * 117.50270 * 144.97282 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6289 -0.9811 -1.0552 6 7 6.0933 -1.0665 -0.9767 7 6 6.6286 -1.9240 -2.0425 8 6 8.1353 -2.1028 -1.8450 9 6 8.9346 -0.8284 -1.7545 10 1 9.2766 -0.3404 -2.6551 11 6 9.2244 -0.2825 -0.5220 12 7 9.9171 0.8326 -0.4432 13 14 8.6331 -1.1269 1.0359 14 1 9.7045 -2.0148 1.5548 15 1 8.3006 -0.1027 2.0584 16 1 7.4244 -1.9347 0.7329 17 6 8.6010 -3.2904 -1.0003 18 6 8.7982 -3.3062 -2.5182 19 1 -0.3633 0.7006 0.7519 20 1 -0.3633 0.3008 -0.9826 21 1 -0.3633 -1.0014 0.2309 22 1 4.4816 -0.2986 0.9827 23 1 4.4805 1.0035 -0.2308 24 1 4.3379 -0.6337 -2.0466 25 1 4.1974 -1.9655 -0.8741 26 1 6.5112 -0.1486 -1.0070 27 1 6.4417 -1.4597 -3.0108 28 1 6.1394 -2.8974 -2.0059 29 1 10.1207 1.2168 0.4240 30 1 9.4856 -3.1501 -0.3791 31 1 7.8342 -3.9446 -0.5856 32 1 8.1608 -3.9709 -3.1015 33 1 9.8123 -3.1761 -2.8960 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125738517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:46 Heat of formation + Delta-G solvation = 48.398144 kcal Electronic energy + Delta-G solvation = -13123.042156 eV Core-core repulsion = 10956.876800 eV Total energy + Delta-G solvation = -2166.165357 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.15519 -37.03203 -34.93162 -34.16318 -31.94427 -28.58797 -27.58979 -25.77411 -23.39889 -22.96888 -20.70642 -18.29611 -17.51844 -16.84388 -16.63559 -15.91691 -15.42064 -15.20502 -14.61719 -14.52556 -14.34153 -14.08889 -13.74350 -13.58225 -13.00187 -12.85526 -12.48223 -12.42898 -11.98156 -11.71582 -11.32837 -10.87722 -10.73672 -10.61116 -10.52314 -10.21425 -9.00961 -8.22040 -6.31302 1.47216 1.55988 1.71432 1.76463 1.88748 2.56307 3.06013 3.16233 3.37043 3.78077 4.09565 4.25805 4.27086 4.44326 4.55217 4.60051 4.77708 4.79324 4.82235 4.85489 4.87591 4.92546 5.04257 5.05730 5.12648 5.14910 5.39407 5.52956 5.80703 6.30316 6.36711 6.53354 6.71060 6.79728 7.42601 8.91574 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.034663 B = 0.007966 C = 0.007191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.579335 B = 3514.032173 C = 3893.007355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.201 4.201 3 C -0.215 4.215 4 C -0.007 4.007 5 C 0.072 3.928 6 N -0.690 5.690 7 C 0.110 3.890 8 C -0.019 4.019 9 C -0.490 4.490 10 H 0.026 0.974 11 C 0.034 3.966 12 N -0.953 5.953 13 Si 0.932 3.068 14 H -0.305 1.305 15 H -0.314 1.314 16 H -0.178 1.178 17 C -0.190 4.190 18 C -0.170 4.170 19 H 0.094 0.906 20 H 0.093 0.907 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.083 0.917 24 H 0.029 0.971 25 H 0.075 0.925 26 H 0.342 0.658 27 H 0.021 0.979 28 H 0.074 0.926 29 H 0.262 0.738 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.466 -5.456 0.833 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.201 4.201 3 C -0.216 4.216 4 C -0.044 4.044 5 C -0.057 4.057 6 N -0.322 5.322 7 C -0.019 4.019 8 C -0.020 4.020 9 C -0.528 4.528 10 H 0.045 0.955 11 C -0.164 4.164 12 N -0.592 5.592 13 Si 0.759 3.241 14 H -0.234 1.234 15 H -0.243 1.243 16 H -0.098 1.098 17 C -0.227 4.227 18 C -0.208 4.208 19 H 0.112 0.888 20 H 0.112 0.888 21 H 0.113 0.887 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.047 0.953 25 H 0.094 0.906 26 H 0.161 0.839 27 H 0.039 0.961 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.432 -5.843 1.381 17.494 hybrid contribution 0.648 0.904 -0.032 1.113 sum -15.783 -4.939 1.349 16.593 Atomic orbital electron populations 1.19093 0.81845 1.04338 1.04284 1.23393 0.95193 1.00749 1.00769 1.22582 0.94084 1.02469 1.02454 1.18579 0.84317 1.00455 1.01027 1.21814 0.88181 0.99267 0.96441 1.60583 1.04082 1.18501 1.49010 1.21359 0.93140 0.96299 0.91074 1.19384 0.92513 0.88344 1.01792 1.20414 1.33019 1.07055 0.92287 0.95537 1.25745 0.93659 0.94641 1.02364 1.70070 1.41354 1.22025 1.25770 0.86127 0.81988 0.78640 0.77385 1.23365 1.24268 1.09839 1.22878 1.02386 1.03660 0.93768 1.22944 1.01409 1.02168 0.94301 0.88769 0.88846 0.88743 0.89168 0.89887 0.95312 0.90610 0.83921 0.96119 0.90777 0.92921 0.91930 0.88100 0.87546 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.58 10.32 70.18 0.72 0.15 16 2 C -0.20 -5.02 14.13 31.13 0.44 -4.58 16 3 C -0.22 -6.22 13.34 31.13 0.42 -5.80 16 4 C -0.01 -0.20 5.92 28.79 0.17 -0.03 16 5 C 0.07 2.23 5.65 86.30 0.49 2.71 16 6 N -0.69 -26.09 3.86 -513.91 -1.99 -28.07 16 7 C 0.11 4.20 5.61 86.31 0.48 4.68 16 8 C -0.02 -0.86 1.37 -52.93 -0.07 -0.93 16 9 C -0.49 -27.41 8.73 25.60 0.22 -27.18 16 10 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 11 C 0.03 1.93 5.13 84.66 0.43 2.36 16 12 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 13 Si 0.93 45.28 23.18 68.60 1.59 46.87 16 14 H -0.31 -15.12 7.08 99.48 0.70 -14.42 16 15 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 16 H -0.18 -7.74 5.17 99.48 0.51 -7.22 16 17 C -0.19 -7.73 7.06 30.62 0.22 -7.52 16 18 C -0.17 -6.58 9.96 30.62 0.30 -6.27 16 19 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 20 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 21 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 23 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.34 14.52 7.24 -89.69 -0.65 13.87 16 27 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.07 2.44 8.08 -2.39 -0.02 2.42 16 29 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 30 H 0.06 2.80 6.31 -2.39 -0.02 2.79 16 31 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 33 H 0.07 2.97 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -66.00 275.13 3.97 -62.04 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.23 Total: 20.88 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 3.83 Total: -42.41 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.69 Total: -87.38 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.59 Total: 46.87 kcal Total: -66.00 3.97 -62.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125738517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.435 kcal (2) G-P(sol) polarization free energy of solvation -66.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds