Wall clock time and date at job start Mon Mar 30 2020 02:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 N 1.46505 * 109.47307 * 180.02562 * 3 2 1 5 5 C 1.36644 * 124.78928 * 90.02396 * 4 3 2 6 6 C 1.50697 * 125.30926 * 359.97438 * 5 4 3 7 7 C 1.34333 * 109.39054 * 180.02562 * 5 4 3 8 8 C 1.46969 * 106.48310 * 359.97438 * 7 5 4 9 9 C 1.41355 * 127.10667 * 180.02562 * 8 7 5 10 10 H 1.08000 * 119.99388 * 180.30347 * 9 8 7 11 11 C 1.39675 * 119.99922 * 0.02562 * 9 8 7 12 12 N 1.31052 * 120.00031 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99618 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47093 * 60.00332 * 13 11 9 15 15 H 1.48495 * 109.47002 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47239 * 300.00052 * 13 11 9 17 17 C 1.34913 * 124.78964 * 270.34044 * 4 3 2 18 18 C 1.50698 * 126.04125 * 0.02562 * 17 4 3 19 19 H 1.09001 * 109.46655 * 300.00065 * 1 2 3 20 20 H 1.09002 * 109.46687 * 59.99911 * 1 2 3 21 21 H 1.08993 * 109.47104 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47385 * 239.99787 * 2 1 3 23 23 H 1.09002 * 109.47203 * 120.00196 * 2 1 3 24 24 H 1.09001 * 109.47329 * 60.00348 * 3 2 1 25 25 H 1.09002 * 109.47333 * 299.99693 * 3 2 1 26 26 H 1.08995 * 109.47643 * 270.00749 * 6 5 4 27 27 H 1.09006 * 109.46976 * 30.00563 * 6 5 4 28 28 H 1.09000 * 109.47561 * 150.00194 * 6 5 4 29 29 H 1.07994 * 126.75281 * 179.97438 * 7 5 4 30 30 H 0.97000 * 119.99473 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.47073 * 270.21953 * 18 17 4 32 32 H 1.09005 * 109.46921 * 30.21970 * 18 17 4 33 33 H 1.08998 * 109.47449 * 150.21993 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2842 1.4431 -1.1231 6 6 3.7707 1.4433 -2.5399 7 6 5.5795 1.4423 -0.7670 8 6 5.6079 1.4417 0.7024 9 6 6.7516 1.4414 1.5333 10 1 6.6386 1.4360 2.6073 11 6 8.0275 1.4421 0.9651 12 7 8.1645 1.4436 -0.3383 13 14 9.5388 1.4423 2.0631 14 1 9.5283 0.2295 2.9199 15 1 10.7621 1.4437 1.2214 16 1 9.5273 2.6545 2.9209 17 6 4.2753 1.4357 1.1070 18 6 3.7811 1.4265 2.5306 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 3.6471 0.4158 -2.8818 27 1 2.8099 1.9569 -2.5780 28 1 4.4833 1.9576 -3.1847 29 1 6.4320 1.4422 -1.4300 30 1 9.0506 1.4437 -0.7328 31 1 3.6578 2.4519 2.8791 32 1 2.8232 0.9085 2.5793 33 1 4.5047 0.9123 3.1632 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161237844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:15 Heat of formation + Delta-G solvation = 20.450480 kcal Electronic energy + Delta-G solvation = -13625.137310 eV Core-core repulsion = 11457.760052 eV Total energy + Delta-G solvation = -2167.377258 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.39938 -34.56798 -33.03071 -31.30810 -29.78230 -27.95100 -26.43204 -24.30569 -22.25052 -21.23037 -19.07291 -17.48026 -16.12946 -14.85471 -14.60096 -14.49560 -14.03743 -12.98728 -12.79742 -12.56383 -12.28802 -12.12400 -11.78470 -11.53513 -11.34724 -11.19093 -11.06130 -11.00586 -10.61159 -10.50838 -10.36412 -10.31321 -9.69942 -9.11299 -9.02659 -6.83527 -6.33869 -6.19712 -3.75216 3.19402 3.27611 3.31254 3.74170 4.25342 4.38135 4.55583 5.15057 5.24699 5.47172 5.61028 5.79149 5.84278 5.96028 6.00384 6.10234 6.12039 6.28031 6.35871 6.37470 6.43317 6.55818 6.66642 6.69689 6.96852 7.50893 7.61356 7.91936 8.11229 8.50209 8.72817 9.11325 9.17202 9.46833 9.49171 10.76115 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.046047 B = 0.008972 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.926420 B = 3120.238949 C = 3587.273171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.451 5.451 5 C -0.033 4.033 6 C -0.067 4.067 7 C -0.190 4.190 8 C 0.045 3.955 9 C -0.438 4.438 10 H 0.064 0.936 11 C 0.068 3.932 12 N -0.830 5.830 13 Si 0.905 3.095 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.271 1.271 17 C -0.154 4.154 18 C -0.039 4.039 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.152 0.848 30 H 0.267 0.733 31 H 0.034 0.966 32 H 0.030 0.970 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 -1.001 -0.855 9.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.134 5.134 5 C -0.141 4.141 6 C -0.125 4.125 7 C -0.218 4.218 8 C 0.038 3.962 9 C -0.472 4.472 10 H 0.082 0.918 11 C -0.143 4.143 12 N -0.461 5.461 13 Si 0.732 3.268 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.197 1.197 17 C -0.260 4.260 18 C -0.097 4.097 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.169 0.831 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.511 -0.987 -0.985 9.613 hybrid contribution 0.713 -0.029 0.486 0.863 sum -8.798 -1.017 -0.499 8.871 Atomic orbital electron populations 1.21709 0.95828 1.01463 1.01512 1.21942 0.95102 0.97873 1.02898 1.21375 0.81396 0.96244 1.01713 1.42647 1.02751 1.62874 1.05154 1.19945 0.91647 1.15585 0.86888 1.20083 0.99486 1.00353 0.92533 1.22435 0.93088 1.10349 0.95974 1.18265 0.89431 0.96784 0.91704 1.18689 0.89510 1.45744 0.93223 0.91782 1.25655 0.99935 0.93759 0.94972 1.69789 1.23586 1.42157 1.10524 0.86444 0.80784 0.79190 0.80425 1.19681 1.20871 1.19668 1.19961 0.90446 1.28932 0.86620 1.19684 0.98363 0.99082 0.92539 0.92838 0.92894 0.92789 0.91806 0.91566 0.91306 0.91501 0.93236 0.93885 0.91711 0.83118 0.92219 0.94756 0.95084 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.14 -2.12 6.26 -26.73 -0.17 -2.29 16 3 C 0.12 2.02 5.37 -4.04 -0.02 1.99 16 4 N -0.45 -10.22 2.70 -107.18 -0.29 -10.51 16 5 C -0.03 -0.78 6.83 -81.83 -0.56 -1.34 16 6 C -0.07 -1.23 10.04 36.00 0.36 -0.87 16 7 C -0.19 -5.24 9.76 -37.42 -0.37 -5.61 16 8 C 0.04 1.28 6.10 -104.79 -0.64 0.64 16 9 C -0.44 -12.65 9.12 -37.86 -0.35 -13.00 16 10 H 0.06 1.78 7.36 -52.49 -0.39 1.39 16 11 C 0.07 1.87 5.49 -17.35 -0.10 1.78 16 12 N -0.83 -23.35 10.42 55.53 0.58 -22.77 16 13 Si 0.91 20.64 29.56 -169.99 -5.02 15.62 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 C -0.15 -3.89 6.99 -80.86 -0.57 -4.46 16 18 C -0.04 -0.83 9.62 36.00 0.35 -0.48 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 23 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 24 H 0.07 1.13 7.53 -51.93 -0.39 0.74 16 25 H 0.07 1.05 6.87 -51.93 -0.36 0.69 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.69 6.91 -51.93 -0.36 0.33 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.15 4.33 6.02 -52.49 -0.32 4.01 16 30 H 0.27 6.96 8.30 -40.82 -0.34 6.62 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.57 7.61 -51.93 -0.40 0.17 16 33 H 0.06 1.27 7.59 -51.93 -0.39 0.87 16 LS Contribution 272.82 15.07 4.11 4.11 Total: -1.00 -30.47 272.82 -7.42 -37.89 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.11 Total: 0.63 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -1.68 Total: -24.96 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.29 Total: -33.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.47 -7.42 -37.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161237844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.341 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds