Wall clock time and date at job start Mon Mar 30 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47280 * 2 1 4 4 N 1.46505 * 109.47307 * 180.02562 * 3 2 1 5 5 C 1.36644 * 124.78928 * 90.02396 * 4 3 2 6 6 C 1.50697 * 125.30926 * 359.97438 * 5 4 3 7 7 C 1.34333 * 109.39054 * 180.02562 * 5 4 3 8 8 C 1.46969 * 106.48310 * 359.97438 * 7 5 4 9 9 C 1.41355 * 127.10667 * 180.02562 * 8 7 5 10 10 H 1.08000 * 119.99388 * 180.30347 * 9 8 7 11 11 C 1.39675 * 119.99922 * 0.02562 * 9 8 7 12 12 N 1.31052 * 120.00031 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99618 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47093 * 60.00332 * 13 11 9 15 15 H 1.48495 * 109.47002 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47239 * 300.00052 * 13 11 9 17 17 C 1.34913 * 124.78964 * 270.34044 * 4 3 2 18 18 C 1.50698 * 126.04125 * 0.02562 * 17 4 3 19 19 H 1.09001 * 109.46655 * 300.00065 * 1 2 3 20 20 H 1.09002 * 109.46687 * 59.99911 * 1 2 3 21 21 H 1.08993 * 109.47104 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47385 * 239.99787 * 2 1 3 23 23 H 1.09002 * 109.47203 * 120.00196 * 2 1 3 24 24 H 1.09001 * 109.47329 * 60.00348 * 3 2 1 25 25 H 1.09002 * 109.47333 * 299.99693 * 3 2 1 26 26 H 1.08995 * 109.47643 * 270.00749 * 6 5 4 27 27 H 1.09006 * 109.46976 * 30.00563 * 6 5 4 28 28 H 1.09000 * 109.47561 * 150.00194 * 6 5 4 29 29 H 1.07994 * 126.75281 * 179.97438 * 7 5 4 30 30 H 0.97000 * 119.99473 * 180.02562 * 12 11 9 31 31 H 1.09004 * 109.47073 * 270.21953 * 18 17 4 32 32 H 1.09005 * 109.46921 * 30.21970 * 18 17 4 33 33 H 1.08998 * 109.47449 * 150.21993 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2842 1.4431 -1.1231 6 6 3.7707 1.4433 -2.5399 7 6 5.5795 1.4423 -0.7670 8 6 5.6079 1.4417 0.7024 9 6 6.7516 1.4414 1.5333 10 1 6.6386 1.4360 2.6073 11 6 8.0275 1.4421 0.9651 12 7 8.1645 1.4436 -0.3383 13 14 9.5388 1.4423 2.0631 14 1 9.5283 0.2295 2.9199 15 1 10.7621 1.4437 1.2214 16 1 9.5273 2.6545 2.9209 17 6 4.2753 1.4357 1.1070 18 6 3.7811 1.4265 2.5306 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.6768 1.9563 0.8900 25 1 1.6768 1.9563 -0.8900 26 1 3.6471 0.4158 -2.8818 27 1 2.8099 1.9569 -2.5780 28 1 4.4833 1.9576 -3.1847 29 1 6.4320 1.4422 -1.4300 30 1 9.0506 1.4437 -0.7328 31 1 3.6578 2.4519 2.8791 32 1 2.8232 0.9085 2.5793 33 1 4.5047 0.9123 3.1632 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161237844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:14 Heat of formation + Delta-G solvation = 3.710995 kcal Electronic energy + Delta-G solvation = -13625.863189 eV Core-core repulsion = 11457.760052 eV Total energy + Delta-G solvation = -2168.103137 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.22977 -36.08333 -34.84528 -33.07421 -31.44552 -29.60022 -28.24953 -25.87296 -24.08819 -22.51090 -21.00902 -19.28569 -18.12115 -16.47350 -16.44406 -15.93967 -15.59787 -14.60586 -14.25326 -14.10680 -13.86155 -13.79181 -13.16700 -12.96686 -12.91739 -12.88319 -12.72245 -12.59163 -12.34693 -12.31270 -11.85304 -11.67634 -11.56591 -11.10271 -11.00808 -8.83267 -8.25795 -8.22068 -5.84882 1.37608 1.40498 1.52256 1.88287 2.35394 2.52722 2.70448 3.70153 3.91998 4.08194 4.26896 4.44799 4.50975 4.59874 4.61936 4.69566 4.77087 4.87147 4.93512 4.99290 5.10105 5.16318 5.18853 5.25395 5.43084 5.43357 5.60519 5.99924 6.09568 6.43693 6.71292 7.09202 7.29283 7.41166 7.49733 8.74525 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.046047 B = 0.008972 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.926420 B = 3120.238949 C = 3587.273171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.107 3.893 4 N -0.446 5.446 5 C -0.023 4.023 6 C -0.062 4.062 7 C -0.244 4.244 8 C -0.014 4.014 9 C -0.475 4.475 10 H 0.060 0.940 11 C 0.016 3.984 12 N -0.861 5.861 13 Si 0.979 3.021 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.266 1.266 17 C -0.156 4.156 18 C -0.035 4.035 19 H 0.063 0.937 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.270 0.730 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.519 -1.003 -0.672 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.127 5.127 5 C -0.134 4.134 6 C -0.119 4.119 7 C -0.272 4.272 8 C -0.020 4.020 9 C -0.509 4.509 10 H 0.078 0.922 11 C -0.191 4.191 12 N -0.493 5.493 13 Si 0.802 3.198 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.190 1.190 17 C -0.263 4.263 18 C -0.092 4.092 19 H 0.082 0.918 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.712 -0.991 -0.802 11.781 hybrid contribution 1.209 -0.029 0.395 1.272 sum -10.503 -1.021 -0.407 10.560 Atomic orbital electron populations 1.21655 0.92466 1.02731 1.02810 1.21849 0.97867 0.95777 1.01603 1.21813 0.77794 0.98231 1.03608 1.43012 1.05090 1.60508 1.04098 1.20492 0.90829 1.12643 0.89402 1.20155 1.00829 1.01923 0.89003 1.22327 0.94494 1.14618 0.95759 1.18776 0.91201 0.99346 0.92682 1.18979 0.90995 1.47673 0.93230 0.92159 1.26541 1.02838 0.93210 0.96514 1.69944 1.24278 1.42964 1.12080 0.85316 0.76756 0.79348 0.78428 1.19061 1.19840 1.19040 1.20497 0.90122 1.26744 0.88915 1.19703 0.99407 1.00130 0.89972 0.91787 0.91369 0.91621 0.92769 0.93341 0.89945 0.89100 0.91588 0.90807 0.91359 0.85544 0.91997 0.93530 0.92079 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.91 71.98 0.71 -1.88 16 2 C -0.13 -3.62 6.26 30.59 0.19 -3.43 16 3 C 0.11 3.35 5.37 86.38 0.46 3.81 16 4 N -0.45 -19.66 2.70 -493.00 -1.33 -20.99 16 5 C -0.02 -1.09 6.83 40.92 0.28 -0.81 16 6 C -0.06 -2.14 10.04 71.24 0.72 -1.42 16 7 C -0.24 -14.01 9.76 23.67 0.23 -13.78 16 8 C -0.01 -0.82 6.10 -19.97 -0.12 -0.94 16 9 C -0.47 -28.66 9.12 23.38 0.21 -28.45 16 10 H 0.06 3.50 7.36 -2.91 -0.02 3.48 16 11 C 0.02 0.94 5.49 85.16 0.47 1.40 16 12 N -0.86 -50.82 10.42 21.79 0.23 -50.59 16 13 Si 0.98 43.63 29.56 68.60 2.03 45.66 16 14 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 C -0.16 -7.86 6.99 42.33 0.30 -7.57 16 18 C -0.03 -1.43 9.62 71.24 0.69 -0.74 16 19 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 20 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 24 H 0.08 2.39 7.53 -2.39 -0.02 2.37 16 25 H 0.09 2.44 6.87 -2.39 -0.02 2.43 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.07 2.10 6.91 -2.38 -0.02 2.08 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.13 7.74 6.02 -2.91 -0.02 7.73 16 30 H 0.27 14.69 8.30 -92.71 -0.77 13.92 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.06 2.12 7.61 -2.38 -0.02 2.10 16 33 H 0.05 2.17 7.59 -2.39 -0.02 2.15 16 Total: -1.00 -69.60 272.82 6.13 -63.47 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 1.07 Total: 16.27 kcal Atomic # 6 Polarization: -57.95 SS G_CDS: 4.14 Total: -53.82 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.10 Total: -71.58 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -69.60 6.13 -63.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161237844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.180 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds