Wall clock time and date at job start Mon Mar 30 2020 02:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86803 * 119.99692 * 2 1 4 4 H 1.48501 * 109.46792 * 270.00183 * 3 2 1 5 5 H 1.48502 * 109.46925 * 30.00010 * 3 2 1 6 6 H 1.48494 * 109.46969 * 149.99965 * 3 2 1 7 7 C 1.38877 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99524 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00546 * 0.02562 * 7 2 1 10 10 C 1.76202 * 100.00346 * 174.88550 * 9 7 2 11 11 C 1.39499 * 119.91284 * 274.25688 * 10 9 7 12 12 C 1.36478 * 120.07801 * 179.71661 * 11 10 9 13 13 C 1.40185 * 119.91754 * 0.57506 * 12 11 10 14 14 C 1.46716 * 120.07925 * 179.67786 * 13 12 11 15 15 O 1.21316 * 120.00343 * 0.02562 * 14 13 12 16 16 C 1.40182 * 119.83528 * 359.69595 * 13 12 11 17 17 C 1.36486 * 119.91419 * 359.97438 * 16 13 12 18 18 H 0.96995 * 120.00153 * 359.97438 * 1 2 3 19 19 H 1.07994 * 119.95381 * 359.97438 * 11 10 9 20 20 H 1.08011 * 120.04001 * 180.25203 * 12 11 10 21 21 H 1.08009 * 119.99408 * 180.02562 * 14 13 12 22 22 H 1.08001 * 120.04270 * 179.97438 * 16 13 12 23 23 H 1.07999 * 119.95114 * 179.97438 * 17 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6178 0.0000 4 1 2.4963 2.0465 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5464 1.4403 0.7000 7 6 2.0094 -1.2027 0.0005 8 1 3.0895 -1.2027 0.0001 9 16 1.1285 -2.7287 0.0005 10 6 2.4724 -3.8579 -0.1534 11 6 2.9679 -4.1814 -1.4166 12 6 4.0125 -5.0512 -1.5394 13 6 4.5795 -5.6289 -0.3949 14 6 5.6979 -6.5697 -0.5232 15 8 6.1334 -6.8483 -1.6207 16 6 4.0751 -5.3056 0.8725 17 6 3.0346 -4.4298 0.9878 18 1 -0.4850 0.8400 0.0004 19 1 2.5271 -3.7399 -2.2981 20 1 4.3983 -5.2981 -2.5175 21 1 6.1335 -7.0143 0.3595 22 1 4.5091 -5.7490 1.7564 23 1 2.6453 -4.1806 1.9639 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168236708.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:06 Heat of formation + Delta-G solvation = -36.567490 kcal Electronic energy + Delta-G solvation = -10501.948071 eV Core-core repulsion = 8405.466348 eV Total energy + Delta-G solvation = -2096.481723 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.66112 -38.94826 -34.68268 -32.34638 -32.05584 -27.78429 -25.84038 -23.55067 -21.95029 -19.96614 -18.33536 -17.39184 -16.94563 -16.74593 -15.40760 -15.30905 -15.27887 -14.91912 -14.44958 -13.87261 -13.72697 -13.16032 -12.98120 -12.59721 -12.08197 -11.80163 -11.23650 -10.92041 -10.66822 -10.03499 -9.67078 -8.83511 -8.41053 -6.21329 -0.47593 0.48891 1.26429 1.37659 1.42774 1.50629 1.67501 2.22765 2.80969 2.92473 3.39540 3.40484 3.84168 4.02082 4.38596 4.46491 4.61087 4.70672 5.06145 5.23171 5.33490 5.37782 5.52022 5.88962 6.14076 6.50295 6.99203 8.65968 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.052231 B = 0.007768 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.953829 B = 3603.462714 C = 3802.362393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.069 0.931 9 S -0.097 6.097 10 C -0.086 4.086 11 C -0.117 4.117 12 C -0.076 4.076 13 C -0.201 4.201 14 C 0.400 3.600 15 O -0.508 6.508 16 C -0.054 4.054 17 C -0.112 4.112 18 H 0.275 0.725 19 H 0.117 0.883 20 H 0.134 0.866 21 H 0.166 0.834 22 H 0.184 0.816 23 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.126 -8.990 3.007 13.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.185 4.185 3 Si 0.815 3.185 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.684 4.684 8 H 0.087 0.913 9 S 0.138 5.862 10 C -0.197 4.197 11 C -0.138 4.138 12 C -0.096 4.096 13 C -0.202 4.202 14 C 0.261 3.739 15 O -0.383 6.383 16 C -0.073 4.073 17 C -0.132 4.132 18 H 0.084 0.916 19 H 0.135 0.865 20 H 0.151 0.849 21 H 0.182 0.818 22 H 0.201 0.799 23 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.001 -9.189 2.514 12.441 hybrid contribution 1.042 1.460 -0.369 1.831 sum 9.043 -7.729 2.145 12.088 Atomic orbital electron populations 1.70048 1.07579 1.28938 1.47475 1.26019 0.96037 1.02862 0.93552 0.85031 0.78248 0.76404 0.78850 1.19428 1.19500 1.18828 1.23066 0.94641 0.91284 1.59425 0.91303 1.83483 1.08491 0.98697 1.95559 1.23051 1.00592 0.99762 0.96321 1.21405 0.97237 0.98291 0.96834 1.21306 0.94167 0.94430 0.99678 1.21418 1.01709 1.03044 0.94065 1.24645 0.79110 0.76620 0.93480 1.90524 1.58395 1.55735 1.33692 1.21562 0.93698 0.94386 0.97648 1.21590 0.96576 0.97134 0.97931 0.91589 0.86495 0.84851 0.81839 0.79903 0.84544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.14 13.22 21.66 0.29 -52.85 14 2 C 0.02 1.17 5.49 84.90 0.47 1.64 14 3 Si 0.99 43.24 29.55 68.60 2.03 45.27 14 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 14 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 14 7 C -0.54 -30.54 9.47 67.97 0.64 -29.89 14 8 H 0.07 3.87 7.80 -2.91 -0.02 3.85 14 9 S -0.10 -5.10 21.41 -56.49 -1.21 -6.31 14 10 C -0.09 -3.63 5.48 22.87 0.13 -3.51 14 11 C -0.12 -4.56 9.74 22.16 0.22 -4.34 14 12 C -0.08 -2.46 9.54 22.33 0.21 -2.24 14 13 C -0.20 -5.24 5.87 -20.12 -0.12 -5.36 14 14 C 0.40 8.05 11.43 70.04 0.80 8.85 14 15 O -0.51 -14.55 17.15 -3.14 -0.05 -14.60 14 16 C -0.05 -1.29 9.74 22.33 0.22 -1.07 14 17 C -0.11 -3.77 9.74 22.16 0.22 -3.56 14 18 H 0.27 14.94 8.31 -92.71 -0.77 14.17 14 19 H 0.12 4.70 8.06 -2.91 -0.02 4.68 14 20 H 0.13 4.05 7.64 -2.91 -0.02 4.03 14 21 H 0.17 1.38 8.06 -2.91 -0.02 1.35 14 22 H 0.18 2.39 8.06 -2.91 -0.02 2.36 14 23 H 0.14 4.41 8.06 -2.91 -0.02 4.39 14 Total: -1.00 -69.74 235.13 5.04 -64.70 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: 1.21 Total: 3.29 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 2.78 Total: -39.49 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.29 Total: -52.85 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.05 Total: -14.60 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.21 Total: -6.31 kcal Total: -69.74 5.04 -64.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168236708.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.133 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds