Wall clock time and date at job start Mon Mar 30 2020 02:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.52725 * 121.11365 * 2 1 4 4 C 1.53897 * 107.16060 * 134.23071 * 3 2 1 5 5 H 1.09002 * 111.97072 * 182.14383 * 4 3 2 6 6 C 1.54457 * 108.45079 * 306.29777 * 4 3 2 7 7 C 1.54218 * 105.06432 * 90.34114 * 6 4 3 8 8 C 1.54465 * 105.06350 * 0.02562 * 7 6 4 9 9 H 1.09002 * 112.05093 * 145.56152 * 8 7 6 10 10 C 1.51522 * 121.00431 * 180.32821 * 2 1 3 11 11 N 1.48605 * 104.51676 * 23.97976 * 8 7 6 12 12 C 1.46902 * 111.00190 * 79.83374 * 11 8 7 13 13 C 1.50706 * 109.46577 * 54.63465 * 12 11 8 14 14 H 1.07995 * 120.00167 * 359.72326 * 13 12 11 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 H 1.08002 * 120.00476 * 179.66736 * 1 2 3 22 22 H 1.07998 * 119.99790 * 359.67265 * 1 2 3 23 23 H 1.08994 * 109.62607 * 15.11958 * 3 2 1 24 24 H 1.08995 * 110.56766 * 253.87613 * 3 2 1 25 25 H 1.09005 * 110.32373 * 209.23549 * 6 4 3 26 26 H 1.08999 * 110.32177 * 331.44230 * 6 4 3 27 27 H 1.08994 * 110.32624 * 118.90261 * 7 6 4 28 28 H 1.08998 * 110.32307 * 241.10864 * 7 6 4 29 29 H 1.09001 * 109.80337 * 105.99202 * 10 2 1 30 30 H 1.09003 * 109.79957 * 345.12954 * 10 2 1 31 31 H 1.09000 * 109.47263 * 294.63665 * 12 11 8 32 32 H 1.09001 * 109.47582 * 174.62944 * 12 11 8 33 33 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0992 1.3075 0.0000 4 6 3.2120 1.1663 1.0536 5 1 3.8044 2.0766 1.1457 6 6 2.5656 0.7569 2.3954 7 6 2.5656 -0.7853 2.3862 8 6 3.2126 -1.1787 1.0399 9 1 3.8048 -2.0902 1.1214 10 6 2.0905 -1.2987 -0.0074 11 7 4.0436 -0.0041 0.6686 12 6 5.3178 -0.0084 1.3996 13 6 6.0220 -1.3215 1.1737 14 1 5.5662 -2.0789 0.5532 15 6 7.2451 -1.5583 1.7643 16 7 7.7971 -0.6384 2.5252 17 14 8.1183 -3.1856 1.4838 18 1 8.3801 -3.3633 0.0330 19 1 9.4058 -3.1906 2.2238 20 1 7.2630 -4.2970 1.9721 21 1 -0.5401 -0.9353 -0.0054 22 1 -0.5400 0.9353 0.0053 23 1 1.4398 2.1331 0.2678 24 1 2.5397 1.4889 -0.9803 25 1 3.1581 1.1304 3.2306 26 1 1.5451 1.1351 2.4550 27 1 3.1579 -1.1689 3.2169 28 1 1.5451 -1.1642 2.4412 29 1 2.5229 -1.4641 -0.9943 30 1 1.4310 -2.1273 0.2510 31 1 5.1262 0.1226 2.4646 32 1 5.9456 0.8070 1.0403 33 1 8.6574 -0.8052 2.9409 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000205538058.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:09 Heat of formation + Delta-G solvation = -0.706600 kcal Electronic energy + Delta-G solvation = -14109.855905 eV Core-core repulsion = 11941.561207 eV Total energy + Delta-G solvation = -2168.294698 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.33853 -35.89999 -34.53200 -32.38876 -31.91718 -29.20502 -27.44336 -25.30181 -23.99696 -21.37595 -21.26279 -18.68012 -18.26955 -17.16100 -16.35152 -16.04633 -15.39559 -15.04351 -14.82897 -14.14667 -13.81325 -13.59129 -13.50866 -13.33358 -12.91660 -12.70930 -12.44931 -12.38586 -12.02811 -11.82767 -11.41473 -11.23963 -11.18529 -10.95777 -10.64735 -9.84539 -9.07872 -8.22076 -6.31461 1.38890 1.42175 1.49900 1.51742 2.38831 3.10825 3.31049 3.77784 3.84851 4.11453 4.17786 4.31340 4.33718 4.53379 4.62120 4.74868 4.85030 4.93940 4.98879 5.03707 5.07980 5.12887 5.18511 5.24496 5.31633 5.42522 5.45023 5.61727 5.86011 5.99756 6.09950 6.35354 6.60273 6.86091 7.37910 8.89778 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.051635 B = 0.009412 C = 0.008807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.134384 B = 2974.346737 C = 3178.397498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 C -0.064 4.064 4 C 0.052 3.948 5 H 0.072 0.928 6 C -0.135 4.135 7 C -0.136 4.136 8 C 0.066 3.934 9 H 0.077 0.923 10 C -0.070 4.070 11 N -0.515 5.515 12 C 0.201 3.799 13 C -0.527 4.527 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.266 1.266 21 H 0.106 0.894 22 H 0.110 0.890 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.036 0.964 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.084 0.916 31 H -0.032 1.032 32 H -0.005 1.005 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 0.537 -2.998 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.115 4.115 3 C -0.101 4.101 4 C -0.057 4.057 5 H 0.090 0.910 6 C -0.174 4.174 7 C -0.175 4.175 8 C -0.043 4.043 9 H 0.095 0.905 10 C -0.107 4.107 11 N -0.238 5.238 12 C 0.074 3.926 13 C -0.565 4.565 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.191 1.191 21 H 0.125 0.875 22 H 0.128 0.872 23 H 0.108 0.892 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.055 0.945 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.103 0.897 31 H -0.014 1.014 32 H 0.013 0.987 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.414 0.585 -3.475 13.869 hybrid contribution 1.041 -0.521 1.134 1.625 sum -12.372 0.064 -2.342 12.592 Atomic orbital electron populations 1.23653 0.93957 1.02689 1.02885 1.22174 0.95148 0.95155 0.99068 1.21180 0.95203 0.95356 0.98374 1.23098 0.94070 0.94492 0.94004 0.91009 1.22726 1.01359 0.95757 0.97528 1.22732 1.00952 0.95938 0.97915 1.22978 0.93009 0.95075 0.93253 0.90486 1.21018 0.95483 0.95638 0.98580 1.65127 1.03125 1.02063 1.53481 1.19375 0.87005 0.96016 0.90160 1.21485 1.04192 1.01211 1.29576 0.91765 1.25918 0.98115 1.00841 0.94757 1.70089 1.18165 1.36002 1.33179 0.85468 0.77587 0.79237 0.78550 1.19336 1.20825 1.19117 0.87539 0.87191 0.89203 0.91063 0.94026 0.89166 0.94486 0.89555 0.91500 0.89740 1.01411 0.98674 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.16 14.01 67.78 0.95 -3.21 16 2 C -0.12 -3.12 4.12 -15.57 -0.06 -3.19 16 3 C -0.06 -1.83 5.73 30.81 0.18 -1.65 16 4 C 0.05 1.92 3.58 45.38 0.16 2.08 16 5 H 0.07 2.72 8.07 -2.39 -0.02 2.70 16 6 C -0.13 -4.57 5.42 31.50 0.17 -4.40 16 7 C -0.14 -4.86 5.58 31.50 0.18 -4.68 16 8 C 0.07 2.58 3.33 45.41 0.15 2.74 16 9 H 0.08 3.44 6.00 -2.39 -0.01 3.42 16 10 C -0.07 -2.16 5.61 30.43 0.17 -1.99 16 11 N -0.52 -22.97 5.01 -832.32 -4.17 -27.15 16 12 C 0.20 11.07 4.69 85.56 0.40 11.47 16 13 C -0.53 -30.36 8.27 25.60 0.21 -30.15 16 14 H 0.06 3.60 6.50 -2.91 -0.02 3.58 16 15 C 0.00 0.10 5.46 84.66 0.46 0.56 16 16 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 17 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H 0.11 1.99 7.97 -2.91 -0.02 1.97 16 22 H 0.11 1.97 7.98 -2.91 -0.02 1.95 16 23 H 0.09 2.07 7.98 -2.39 -0.02 2.05 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.04 1.53 8.06 -2.38 -0.02 1.51 16 26 H 0.09 2.50 7.72 -2.39 -0.02 2.48 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 2.56 7.71 -2.39 -0.02 2.54 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.20 7.96 -2.39 -0.02 2.18 16 31 H -0.03 -1.89 7.14 -2.39 -0.02 -1.90 16 32 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -64.09 258.90 2.17 -61.92 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.06 Total: 7.83 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 2.97 Total: -32.42 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -3.89 Total: -84.19 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.09 2.17 -61.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000205538058.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.211 kcal (2) G-P(sol) polarization free energy of solvation -64.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds