Wall clock time and date at job start Mon Mar 30 2020 02:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47001 * 110.96880 * 2 1 4 4 C 1.53452 * 109.87376 * 53.07874 * 3 2 1 5 5 N 1.46455 * 108.13722 * 49.88700 * 4 3 2 6 6 C 1.36594 * 129.38079 * 163.45539 * 5 4 3 7 7 C 1.39999 * 126.07159 * 0.33773 * 6 5 4 8 8 H 1.07999 * 119.99437 * 359.97438 * 7 6 5 9 9 C 1.40234 * 120.00115 * 179.97438 * 7 6 5 10 10 N 1.30687 * 120.00189 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99754 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47214 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47053 * 120.00020 * 11 9 7 14 14 H 1.48497 * 109.46909 * 239.99858 * 11 9 7 15 15 N 1.33357 * 107.86491 * 180.34257 * 6 5 4 16 16 C 1.33123 * 109.30447 * 359.90225 * 15 6 5 17 17 C 1.35308 * 108.41701 * 359.96138 * 16 15 6 18 18 C 1.47412 * 110.99984 * 124.22700 * 2 1 3 19 19 H 1.08998 * 109.47433 * 291.82005 * 1 2 3 20 20 H 1.09001 * 109.47243 * 51.82634 * 1 2 3 21 21 H 1.09005 * 109.47405 * 171.82036 * 1 2 3 22 22 H 1.08998 * 109.40384 * 292.94809 * 3 2 1 23 23 H 1.08998 * 109.31612 * 173.15374 * 3 2 1 24 24 H 1.08996 * 109.72548 * 290.22232 * 4 3 2 25 25 H 1.09002 * 109.76376 * 169.57151 * 4 3 2 26 26 H 0.96995 * 120.00227 * 180.02562 * 10 9 7 27 27 H 1.07997 * 125.78715 * 179.97438 * 16 15 6 28 28 H 1.09002 * 109.76629 * 166.30928 * 18 2 1 29 29 H 1.09001 * 109.76872 * 45.58908 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3727 0.0000 4 6 1.3722 2.1700 1.1537 5 7 1.5090 1.3804 2.3796 6 6 1.3925 1.7750 3.6821 7 6 1.0998 3.0693 4.1283 8 1 0.9436 3.8642 3.4141 9 6 1.0096 3.3336 5.5026 10 7 1.1982 2.3716 6.3668 11 14 0.6183 5.0605 6.0978 12 1 0.4500 5.9607 4.9288 13 1 -0.6370 5.0382 6.8908 14 1 1.7315 5.5554 6.9469 15 7 1.6072 0.7085 4.4534 16 6 1.8537 -0.3490 3.6834 17 6 1.7963 0.0417 2.3893 18 6 1.9972 -0.7741 1.1379 19 1 -0.3634 0.3820 0.9540 20 1 -0.3634 0.6351 -0.8079 21 1 -0.3634 -1.0172 -0.1462 22 1 1.7503 1.8542 -0.9467 23 1 3.0777 1.3438 0.1226 24 1 0.3172 2.3511 0.9484 25 1 1.8931 3.1206 1.2682 26 1 1.1354 2.5543 7.3173 27 1 2.0637 -1.3492 4.0325 28 1 3.0598 -0.9675 0.9905 29 1 1.4592 -1.7182 1.2230 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214134905.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:38 Heat of formation + Delta-G solvation = 45.347335 kcal Electronic energy + Delta-G solvation = -13766.126145 eV Core-core repulsion = 11496.288152 eV Total energy + Delta-G solvation = -2269.837993 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.33034 -38.60577 -35.29114 -34.00286 -31.32209 -30.05304 -28.61337 -26.45558 -24.98390 -22.65338 -21.97543 -19.63710 -18.80654 -17.49739 -16.79533 -16.28521 -15.91009 -15.82845 -14.95379 -14.65308 -14.44027 -13.77523 -13.48825 -13.27487 -12.92764 -12.84392 -12.63699 -12.50310 -12.40897 -12.16544 -11.88232 -11.12343 -9.93780 -9.85941 -9.38516 -8.97435 -8.37765 -6.33851 1.30935 1.39734 1.56093 1.74698 2.21212 2.49171 2.68779 3.08595 3.55453 3.79882 4.04193 4.14573 4.31250 4.43006 4.52153 4.60728 4.67884 4.71133 4.83663 4.91936 4.98776 5.11970 5.29928 5.61670 5.90680 5.96691 6.21332 6.24141 6.61591 6.95680 7.34418 8.22693 8.58938 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.050746 B = 0.010340 C = 0.009113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.631260 B = 2707.302492 C = 3071.837974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.531 5.531 3 C 0.053 3.947 4 C 0.082 3.918 5 N -0.504 5.504 6 C 0.343 3.657 7 C -0.494 4.494 8 H 0.085 0.915 9 C 0.031 3.969 10 N -0.794 5.794 11 Si 0.996 3.004 12 H -0.252 1.252 13 H -0.268 1.268 14 H -0.268 1.268 15 N -0.566 5.566 16 C -0.047 4.047 17 C -0.157 4.157 18 C 0.151 3.849 19 H 0.000 1.000 20 H 0.087 0.913 21 H 0.079 0.921 22 H 0.124 0.876 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.276 0.724 27 H 0.149 0.851 28 H 0.087 0.913 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 0.428 -11.084 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.252 5.252 3 C -0.076 4.076 4 C -0.042 4.042 5 N -0.194 5.194 6 C 0.099 3.901 7 C -0.534 4.534 8 H 0.103 0.897 9 C -0.188 4.188 10 N -0.420 5.420 11 Si 0.816 3.184 12 H -0.175 1.175 13 H -0.193 1.193 14 H -0.193 1.193 15 N -0.289 5.289 16 C -0.198 4.198 17 C -0.271 4.271 18 C 0.022 3.978 19 H 0.019 0.981 20 H 0.105 0.895 21 H 0.098 0.902 22 H 0.141 0.859 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.105 0.895 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.509 0.141 -10.623 10.636 hybrid contribution -0.385 0.882 0.763 1.228 sum -0.895 1.023 -9.860 9.953 Atomic orbital electron populations 1.22395 0.87030 1.03192 0.99678 1.62621 1.08711 1.12912 1.40940 1.22572 0.99843 0.88001 0.97141 1.22351 1.01655 0.95999 0.84218 1.45475 1.59385 1.08176 1.06315 1.20418 0.96747 0.95224 0.77750 1.18534 1.49494 0.91862 0.93464 0.89725 1.26795 0.92839 1.03126 0.96058 1.70163 1.34086 1.34929 1.02805 0.84978 0.78464 0.76130 0.78867 1.17522 1.19331 1.19268 1.71423 1.28049 0.98303 1.31106 1.22134 1.08414 0.98867 0.90424 1.21831 1.20615 0.86471 0.98190 1.20663 1.00811 0.94583 0.81706 0.98087 0.89452 0.90205 0.85852 0.90539 0.91531 0.90344 0.91369 0.83323 0.89518 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 8.68 127.69 1.11 1.81 15 2 N -0.53 -15.63 5.22 -924.38 -4.83 -20.46 15 3 C 0.05 1.51 5.95 86.44 0.51 2.02 15 4 C 0.08 3.01 6.04 86.54 0.52 3.54 15 5 N -0.50 -24.36 2.93 -506.56 -1.48 -25.85 15 6 C 0.34 20.13 7.47 133.79 1.00 21.13 15 7 C -0.49 -28.14 9.16 23.18 0.21 -27.93 15 8 H 0.08 4.44 7.78 -2.91 -0.02 4.41 15 9 C 0.03 1.67 5.50 85.35 0.47 2.14 15 10 N -0.79 -46.95 11.90 21.88 0.26 -46.69 15 11 Si 1.00 40.39 29.56 68.60 2.03 42.41 15 12 H -0.25 -9.57 7.11 99.48 0.71 -8.86 15 13 H -0.27 -10.50 7.11 99.48 0.71 -9.79 15 14 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 15 N -0.57 -34.99 9.44 -195.06 -1.84 -36.83 15 16 C -0.05 -2.49 11.83 83.82 0.99 -1.49 15 17 C -0.16 -7.19 5.96 41.10 0.25 -6.95 15 18 C 0.15 5.08 6.19 85.47 0.53 5.61 15 19 H 0.00 0.01 6.18 -2.39 -0.01 0.00 15 20 H 0.09 1.97 8.10 -2.39 -0.02 1.95 15 21 H 0.08 1.98 8.14 -2.38 -0.02 1.96 15 22 H 0.12 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.08 2.22 8.07 -2.39 -0.02 2.20 15 24 H 0.07 2.35 7.17 -2.39 -0.02 2.34 15 25 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 26 H 0.28 14.79 8.29 -92.71 -0.77 14.02 15 27 H 0.15 6.96 8.06 -2.91 -0.02 6.93 15 28 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 29 H 0.09 2.80 8.03 -2.39 -0.02 2.78 15 Total: -1.00 -72.21 241.41 0.87 -71.35 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 1.14 Total: 16.19 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.59 Total: -0.12 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -7.89 Total: -129.83 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Total: -72.21 0.87 -71.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214134905.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.692 kcal (2) G-P(sol) polarization free energy of solvation -72.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds