Wall clock time and date at job start Mon Mar 30 2020 02:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46982 * 110.99717 * 2 1 4 4 C 1.53411 * 109.58023 * 53.24241 * 3 2 1 5 5 N 1.46431 * 108.26532 * 49.58483 * 4 3 2 6 6 C 1.37566 * 128.57023 * 163.61598 * 5 4 3 7 7 C 1.40064 * 127.14989 * 0.29779 * 6 5 4 8 8 H 1.08006 * 119.99663 * 7.10452 * 7 6 5 9 9 C 1.40067 * 120.00152 * 187.11069 * 7 6 5 10 10 N 1.30852 * 120.00138 * 10.35929 * 9 7 6 11 11 Si 1.86800 * 119.99848 * 190.36647 * 9 7 6 12 12 H 1.48498 * 109.47116 * 93.93766 * 11 9 7 13 13 H 1.48501 * 109.46629 * 213.93762 * 11 9 7 14 14 H 1.48503 * 109.46820 * 333.93365 * 11 9 7 15 15 C 1.39861 * 105.70178 * 180.27586 * 6 5 4 16 16 N 1.33207 * 107.52976 * 359.92808 * 15 6 5 17 17 C 1.30585 * 110.00984 * 359.96016 * 16 15 6 18 18 C 1.47287 * 111.00241 * 124.21270 * 2 1 3 19 19 H 1.09000 * 109.46753 * 60.00701 * 1 2 3 20 20 H 1.08996 * 109.46552 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47409 * 300.00336 * 1 2 3 22 22 H 1.09004 * 109.44794 * 173.27165 * 3 2 1 23 23 H 1.09001 * 109.44662 * 293.21164 * 3 2 1 24 24 H 1.08999 * 109.71169 * 169.25154 * 4 3 2 25 25 H 1.09002 * 109.70758 * 289.88066 * 4 3 2 26 26 H 0.96998 * 120.00170 * 180.02562 * 10 9 7 27 27 H 1.08002 * 126.22902 * 179.97438 * 15 6 5 28 28 H 1.09001 * 109.72895 * 45.93601 * 18 2 1 29 29 H 1.08996 * 109.73453 * 166.62491 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3722 0.0000 4 6 1.3724 2.1621 1.1580 5 7 1.5047 1.3663 2.3801 6 6 1.3782 1.7749 3.6875 7 6 1.0840 3.0653 4.1458 8 1 0.8169 3.8403 3.4425 9 6 1.1363 3.3509 5.5161 10 7 1.6516 2.4807 6.3465 11 14 0.4703 4.9737 6.1580 12 1 -0.9400 4.7950 6.5872 13 1 1.2870 5.4209 7.3149 14 1 0.5348 5.9954 5.0822 15 6 1.6040 0.6339 4.4642 16 7 1.8461 -0.3770 3.6312 17 6 1.7892 0.0394 2.3948 18 6 1.9969 -0.7731 1.1371 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 3.0787 1.3453 0.1204 23 1 1.7475 1.8562 -0.9446 24 1 1.8952 3.1108 1.2794 25 1 0.3181 2.3466 0.9517 26 1 1.6874 2.6783 7.2955 27 1 1.5847 0.5818 5.5428 28 1 1.4626 -1.7198 1.2181 29 1 3.0606 -0.9614 0.9919 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214134988.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:35 Heat of formation + Delta-G solvation = 38.481364 kcal Electronic energy + Delta-G solvation = -13766.349314 eV Core-core repulsion = 11496.213590 eV Total energy + Delta-G solvation = -2270.135724 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.37293 -38.63819 -35.59328 -34.25567 -30.86226 -30.35120 -28.66760 -26.60882 -24.86475 -22.73871 -21.95090 -19.64235 -18.99634 -17.44207 -16.90519 -16.29699 -16.06911 -15.87416 -15.04639 -14.64144 -14.51936 -13.88134 -13.38037 -13.16381 -13.00287 -12.90793 -12.71991 -12.65065 -12.39236 -12.17271 -11.94200 -11.24442 -10.32409 -10.06669 -9.54490 -8.91878 -8.62099 -6.31884 1.24297 1.37268 1.52806 1.78772 2.14420 2.40684 2.64025 3.02891 3.30264 3.72004 3.93367 4.00529 4.17662 4.43122 4.49147 4.66122 4.66843 4.80533 4.89735 4.98983 4.99706 5.08735 5.59764 5.67615 5.85727 5.89637 5.98222 6.44572 6.79657 6.89112 7.16364 7.90584 8.39354 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.050846 B = 0.010281 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.545620 B = 2722.747874 C = 3079.542032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.523 5.523 3 C 0.051 3.949 4 C 0.080 3.920 5 N -0.498 5.498 6 C 0.165 3.835 7 C -0.478 4.478 8 H 0.078 0.922 9 C 0.029 3.971 10 N -0.832 5.832 11 Si 1.004 2.996 12 H -0.264 1.264 13 H -0.267 1.267 14 H -0.254 1.254 15 C -0.182 4.182 16 N -0.509 5.509 17 C 0.053 3.947 18 C 0.163 3.837 19 H 0.097 0.903 20 H 0.076 0.924 21 H 0.003 0.997 22 H 0.080 0.920 23 H 0.132 0.868 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.287 0.713 27 H 0.152 0.848 28 H 0.094 0.906 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.018 2.383 -10.544 10.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.077 4.077 4 C -0.044 4.044 5 N -0.191 5.191 6 C 0.052 3.948 7 C -0.513 4.513 8 H 0.096 0.904 9 C -0.185 4.185 10 N -0.459 5.459 11 Si 0.823 3.177 12 H -0.189 1.189 13 H -0.192 1.192 14 H -0.178 1.178 15 C -0.328 4.328 16 N -0.229 5.229 17 C -0.204 4.204 18 C 0.032 3.968 19 H 0.115 0.885 20 H 0.095 0.905 21 H 0.022 0.978 22 H 0.098 0.902 23 H 0.149 0.851 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.169 0.831 28 H 0.112 0.888 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.630 1.321 -10.660 10.865 hybrid contribution -0.611 1.727 1.534 2.389 sum -2.241 3.048 -9.127 9.880 Atomic orbital electron populations 1.22479 0.86698 1.02873 1.00643 1.62644 1.09008 1.13237 1.39560 1.22623 1.00088 0.87720 0.97296 1.22416 1.02083 0.95988 0.83940 1.45102 1.58919 1.09309 1.05756 1.19115 0.98209 0.95822 0.81616 1.18682 1.44989 0.93893 0.93717 0.90377 1.26787 0.92846 1.02825 0.96078 1.69832 1.33718 1.37203 1.05189 0.84876 0.78587 0.75825 0.78364 1.18923 1.19174 1.17786 1.22899 1.22978 0.88623 0.98331 1.69093 1.19327 1.33702 1.00768 1.24032 1.15900 0.84376 0.96066 1.20645 1.01498 0.94465 0.80158 0.88494 0.90529 0.97833 0.90186 0.85062 0.90258 0.90975 0.90255 0.83052 0.88824 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.88 127.69 1.13 1.71 15 2 N -0.52 -15.37 5.22 -924.01 -4.82 -20.19 15 3 C 0.05 1.41 6.00 86.43 0.52 1.93 15 4 C 0.08 2.86 6.07 86.53 0.52 3.39 15 5 N -0.50 -24.25 2.91 -504.23 -1.47 -25.72 15 6 C 0.17 9.55 6.73 39.08 0.26 9.81 15 7 C -0.48 -26.34 9.17 23.16 0.21 -26.12 15 8 H 0.08 4.00 7.86 -2.91 -0.02 3.98 15 9 C 0.03 1.50 5.46 85.28 0.47 1.97 15 10 N -0.83 -46.00 10.59 21.85 0.23 -45.76 15 11 Si 1.00 38.83 29.57 68.60 2.03 40.85 15 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 13 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 14 H -0.25 -9.30 7.11 99.48 0.71 -8.60 15 15 C -0.18 -11.20 10.86 84.88 0.92 -10.28 15 16 N -0.51 -29.24 11.16 -183.81 -2.05 -31.29 15 17 C 0.05 2.59 7.12 138.04 0.98 3.58 15 18 C 0.16 5.83 6.20 85.63 0.53 6.36 15 19 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.08 1.95 8.02 -2.39 -0.02 1.93 15 21 H 0.00 0.10 5.86 -2.39 -0.01 0.09 15 22 H 0.08 2.25 8.07 -2.39 -0.02 2.23 15 23 H 0.13 2.54 8.14 -2.39 -0.02 2.52 15 24 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.07 2.46 6.99 -2.39 -0.02 2.44 15 26 H 0.29 14.27 8.30 -92.71 -0.77 13.50 15 27 H 0.15 9.84 6.06 -2.91 -0.02 9.83 15 28 H 0.09 3.17 7.95 -2.39 -0.02 3.15 15 29 H 0.09 3.12 8.14 -2.39 -0.02 3.10 15 Total: -1.00 -69.80 238.94 0.62 -69.19 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 1.15 Total: 20.59 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 5.55 Total: -7.67 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -8.11 Total: -122.96 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -69.80 0.62 -69.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214134988.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.668 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds