Wall clock time and date at job start Mon Mar 30 2020 02:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46857 * 147.90430 * 3 2 1 5 5 C 1.53001 * 109.47272 * 185.10221 * 4 3 2 6 6 C 1.53001 * 110.01170 * 302.79930 * 5 4 3 7 7 C 1.50694 * 109.47411 * 302.15222 * 6 5 4 8 8 H 1.08001 * 120.00203 * 357.06824 * 7 6 5 9 9 C 1.37881 * 120.00387 * 177.07378 * 7 6 5 10 10 N 1.31509 * 120.00146 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99553 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46736 * 90.00431 * 11 9 7 13 13 H 1.48504 * 109.46881 * 209.99573 * 11 9 7 14 14 H 1.48493 * 109.47448 * 330.00318 * 11 9 7 15 15 C 1.54268 * 110.03684 * 181.35954 * 5 4 3 16 16 C 1.54883 * 104.19493 * 217.10225 * 15 5 4 17 17 C 1.54890 * 102.74740 * 37.94216 * 16 15 5 18 18 C 1.53870 * 110.03324 * 64.18667 * 5 4 3 19 19 H 1.08997 * 109.47244 * 27.90919 * 3 2 1 20 20 H 1.08999 * 109.47346 * 267.90284 * 3 2 1 21 21 H 1.09003 * 109.47436 * 305.09812 * 4 3 2 22 22 H 1.09004 * 109.47325 * 65.10119 * 4 3 2 23 23 H 1.08997 * 109.47419 * 62.15560 * 6 5 4 24 24 H 1.09008 * 109.47196 * 182.15006 * 6 5 4 25 25 H 0.97003 * 119.99889 * 179.97438 * 10 9 7 26 26 H 1.09004 * 110.47784 * 335.78313 * 15 5 4 27 27 H 1.08998 * 110.48846 * 98.41943 * 15 5 4 28 28 H 1.08998 * 110.75649 * 279.62438 * 16 15 5 29 29 H 1.09005 * 110.91003 * 156.32717 * 16 15 5 30 30 H 1.09004 * 110.48234 * 203.37403 * 17 16 15 31 31 H 1.09005 * 110.48785 * 80.73695 * 17 16 15 32 32 H 1.08993 * 110.03691 * 238.57171 * 18 5 4 33 33 H 1.08998 * 110.03314 * 0.02562 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2229 -0.7665 5 6 4.6420 1.1572 -0.8762 6 6 5.2642 1.0722 0.5190 7 6 4.8339 2.2642 1.3344 8 1 4.2207 3.0320 0.8864 9 6 5.2233 2.3747 2.6525 10 7 4.8482 3.4152 3.3639 11 14 6.2835 1.0464 3.4276 12 1 7.7172 1.3823 3.2349 13 1 5.9862 0.9605 4.8801 14 1 5.9903 -0.2594 2.7842 15 6 5.1727 2.4015 -1.6177 16 6 6.3477 1.8628 -2.4710 17 6 5.8268 0.4801 -2.9356 18 6 5.0580 -0.0645 -1.7141 19 1 2.9717 -0.9073 -0.4810 20 1 2.9713 0.0384 1.0269 21 1 2.6814 1.2331 -1.7654 22 1 2.8301 2.1305 -0.2354 23 1 4.9323 0.1573 1.0098 24 1 6.3508 1.0643 0.4324 25 1 5.1218 3.4927 4.2913 26 1 4.3980 2.8231 -2.2581 27 1 5.5282 3.1468 -0.9062 28 1 7.2469 1.7531 -1.8648 29 1 6.5369 2.5116 -3.3262 30 1 6.6599 -0.1769 -3.1860 31 1 5.1578 0.5914 -3.7889 32 1 5.7038 -0.7175 -1.1272 33 1 4.1737 -0.6103 -2.0430 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216452311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:38 Heat of formation + Delta-G solvation = -7.511150 kcal Electronic energy + Delta-G solvation = -13761.794804 eV Core-core repulsion = 11593.205039 eV Total energy + Delta-G solvation = -2168.589766 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.87149 -36.22582 -33.38061 -32.30131 -29.63354 -28.09881 -26.59421 -23.30961 -22.06781 -20.13995 -17.65898 -17.02343 -16.65932 -15.28276 -14.56758 -14.39606 -14.16337 -13.39975 -12.93621 -12.76853 -12.54265 -12.25878 -11.94182 -11.67126 -11.33754 -11.12660 -10.70151 -10.63204 -10.58381 -10.41828 -10.21449 -10.05785 -9.75069 -9.61176 -9.22525 -8.96926 -8.53910 -6.04392 -4.01715 3.16043 3.19490 3.29033 3.38098 3.38671 4.43644 4.46888 5.09425 5.18162 5.27990 5.29776 5.62657 5.66295 5.81685 5.95988 6.02545 6.08664 6.13668 6.20730 6.27447 6.35858 6.42057 6.55266 6.64090 6.79092 6.87604 6.94123 7.18685 7.27121 7.39714 7.79314 7.96920 8.53984 9.01880 9.58455 11.08549 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.013880 C = 0.009706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.528320 B = 2016.875097 C = 2884.158558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C 0.221 3.779 3 C -0.033 4.033 4 C -0.090 4.090 5 C -0.044 4.044 6 C -0.006 4.006 7 C -0.513 4.513 8 H 0.077 0.923 9 C 0.067 3.933 10 N -0.903 5.903 11 Si 0.871 3.129 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.264 1.264 15 C -0.110 4.110 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.124 4.124 19 H 0.099 0.901 20 H 0.122 0.878 21 H 0.050 0.950 22 H 0.084 0.916 23 H 0.019 0.981 24 H 0.013 0.987 25 H 0.262 0.738 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -6.441 -9.550 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.095 4.095 3 C -0.073 4.073 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.043 4.043 7 C -0.551 4.551 8 H 0.095 0.905 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.699 3.301 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.189 1.189 15 C -0.147 4.147 16 C -0.162 4.162 17 C -0.160 4.160 18 C -0.162 4.162 19 H 0.117 0.883 20 H 0.140 0.860 21 H 0.069 0.931 22 H 0.102 0.898 23 H 0.038 0.962 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.056 -6.372 -9.362 11.374 hybrid contribution 1.073 -0.615 0.649 1.397 sum 2.129 -6.988 -8.713 11.370 Atomic orbital electron populations 1.81125 1.13407 1.09791 1.10178 1.29609 0.95632 0.92200 0.92080 1.19577 0.80392 1.01472 1.05831 1.21529 0.95639 0.97381 0.98282 1.21026 0.93349 0.93281 0.96741 1.19768 0.95596 0.97588 0.91323 1.21146 1.32502 1.06151 0.95270 0.90475 1.25016 0.95753 0.95235 0.97386 1.69905 1.46192 1.29124 1.08953 0.86916 0.81288 0.83380 0.78496 1.20496 1.21665 1.18876 1.22413 0.96320 0.98103 0.97862 1.22478 0.99005 0.95867 0.98845 1.22330 0.98980 0.96974 0.97749 1.22430 0.99311 0.98184 0.96236 0.88296 0.86017 0.93128 0.89757 0.96249 0.96890 0.92840 0.93025 0.89706 0.91723 0.92725 0.92735 0.92444 0.91979 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -8.71 18.54 42.15 0.78 -7.93 16 2 C 0.22 3.65 15.43 -20.76 -0.32 3.32 16 3 C -0.03 -0.48 4.98 -29.52 -0.15 -0.63 16 4 C -0.09 -1.42 3.60 -26.73 -0.10 -1.52 16 5 C -0.04 -0.72 0.41 -153.39 -0.06 -0.79 16 6 C -0.01 -0.11 2.39 -27.88 -0.07 -0.18 16 7 C -0.51 -12.82 7.90 -34.44 -0.27 -13.09 16 8 H 0.08 2.09 6.57 -52.49 -0.34 1.74 16 9 C 0.07 1.81 5.47 -17.82 -0.10 1.72 16 10 N -0.90 -26.47 13.96 55.43 0.77 -25.69 16 11 Si 0.87 20.38 27.53 -169.99 -4.68 15.70 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.26 -5.79 6.46 56.52 0.36 -5.42 16 15 C -0.11 -1.80 5.62 -25.07 -0.14 -1.94 16 16 C -0.12 -1.76 6.91 -24.74 -0.17 -1.93 16 17 C -0.12 -1.56 6.83 -25.07 -0.17 -1.74 16 18 C -0.12 -1.71 5.52 -25.62 -0.14 -1.85 16 19 H 0.10 1.18 6.63 -51.93 -0.34 0.84 16 20 H 0.12 1.97 6.77 -51.93 -0.35 1.61 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.08 1.56 6.69 -51.93 -0.35 1.21 16 23 H 0.02 0.39 5.52 -51.93 -0.29 0.10 16 24 H 0.01 0.27 7.72 -51.92 -0.40 -0.13 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 27 H 0.08 1.63 6.82 -51.93 -0.35 1.28 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.87 7.67 -51.93 -0.40 0.47 16 33 H 0.06 0.71 6.65 -51.93 -0.35 0.36 16 LS Contribution 263.65 15.07 3.97 3.97 Total: -1.00 -28.55 263.65 -5.70 -34.25 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.87 Total: -1.68 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.69 Total: -18.63 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 1.55 Total: -33.62 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.68 Total: 15.70 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.55 -5.70 -34.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216452311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.741 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds