Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47148 * 347.25901 * 3 2 1 5 5 C 1.53004 * 109.47107 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.47125 * 184.85919 * 5 4 3 7 7 C 1.46901 * 110.99927 * 184.29952 * 6 5 4 8 8 C 1.52995 * 109.47336 * 185.66354 * 7 6 5 9 9 C 1.50695 * 115.55145 * 304.98740 * 8 7 6 10 10 H 1.08008 * 119.99747 * 274.71523 * 9 8 7 11 11 C 1.37879 * 120.00453 * 94.43560 * 9 8 7 12 12 N 1.31509 * 120.00172 * 180.29457 * 11 9 8 13 13 Si 1.86800 * 119.99804 * 0.29435 * 11 9 8 14 14 H 1.48497 * 109.47205 * 94.25437 * 13 11 9 15 15 H 1.48496 * 109.47468 * 214.26027 * 13 11 9 16 16 H 1.48505 * 109.47075 * 334.25599 * 13 11 9 17 17 C 1.53008 * 117.49752 * 90.65245 * 8 7 6 18 18 C 1.53000 * 117.50141 * 159.31389 * 8 7 6 19 19 H 4.44647 * 5.63376 * 180.02562 * 4 1 2 20 20 H 1.09002 * 109.46705 * 227.26009 * 3 2 1 21 21 H 1.08997 * 109.47393 * 107.26724 * 3 2 1 22 22 H 1.09002 * 109.47229 * 60.00430 * 4 3 2 23 23 H 1.08995 * 109.47440 * 299.99917 * 4 3 2 24 24 H 1.08997 * 109.47272 * 64.85717 * 5 4 3 25 25 H 1.09002 * 109.46883 * 304.85932 * 5 4 3 26 26 H 1.00897 * 110.99617 * 308.24947 * 6 5 4 27 27 H 1.08997 * 109.47366 * 65.65796 * 7 6 5 28 28 H 1.09001 * 109.46829 * 305.66346 * 7 6 5 29 29 H 0.97005 * 120.00308 * 180.02562 * 12 11 9 30 30 H 1.09000 * 117.49507 * 215.00248 * 17 8 7 31 31 H 1.08997 * 117.50070 * 0.02750 * 17 8 7 32 32 H 1.09007 * 117.49514 * 359.97438 * 18 8 7 33 33 H 1.09000 * 117.50152 * 144.97761 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4060 0.3181 5 6 4.6866 -1.4052 0.3187 6 7 5.1770 -2.7769 0.5087 7 6 6.6418 -2.8020 0.6167 8 6 7.1243 -4.2529 0.6713 9 6 6.5101 -5.1018 1.7544 10 1 6.9316 -5.0966 2.7488 11 6 5.4066 -5.8807 1.4774 12 7 4.8671 -6.6170 2.4241 13 14 4.6779 -5.8900 -0.2425 14 1 5.2491 -7.0216 -1.0160 15 1 3.2036 -6.0445 -0.1548 16 1 5.0017 -4.6110 -0.9242 17 6 7.4612 -4.9358 -0.6558 18 6 8.5835 -4.5266 0.3015 19 1 -1.0499 -0.0005 -0.0001 20 1 3.0089 0.6983 0.7548 21 1 3.0092 0.3058 -0.9813 22 1 2.7936 -2.1036 -0.4367 23 1 2.7934 -1.7111 1.2995 24 1 5.0493 -0.7741 1.1300 25 1 5.0501 -1.0179 -0.6331 26 1 4.7476 -3.2059 1.3146 27 1 6.9482 -2.2828 1.5247 28 1 7.0786 -2.3063 -0.2503 29 1 4.0910 -7.1653 2.2292 30 1 7.2386 -5.9991 -0.7453 31 1 7.3395 -4.3514 -1.5677 32 1 9.1996 -3.6729 0.0187 33 1 9.0993 -5.3203 0.8418 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229839392.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = 52.129574 kcal Electronic energy + Delta-G solvation = -13268.157146 eV Core-core repulsion = 11102.153596 eV Total energy + Delta-G solvation = -2166.003550 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13656 -37.24825 -35.00836 -34.16920 -32.05556 -28.29773 -27.25499 -24.82963 -23.21022 -22.40681 -20.64226 -18.92991 -18.23373 -16.89135 -16.70355 -16.02819 -15.55785 -15.42351 -14.80202 -14.60735 -14.25704 -13.54173 -13.49211 -13.24849 -12.89218 -12.53058 -12.19545 -12.04342 -11.87965 -11.68246 -11.32715 -11.10621 -10.97152 -10.87625 -10.54506 -10.19686 -8.92874 -8.23289 -6.31997 1.45475 1.54521 1.86843 1.87894 1.92640 2.54945 3.12803 3.18018 3.49770 3.73462 4.08659 4.22066 4.32488 4.43128 4.46819 4.59164 4.71961 4.75414 4.85276 4.87688 4.93086 4.93578 5.14872 5.19950 5.26532 5.32882 5.42739 5.53933 5.80705 6.32613 6.44091 6.59368 6.72266 6.79962 7.41843 8.90361 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.031439 B = 0.008875 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.393504 B = 3154.072648 C = 3614.876000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.217 4.217 3 C -0.005 4.005 4 C -0.111 4.111 5 C 0.061 3.939 6 N -0.696 5.696 7 C 0.111 3.889 8 C -0.021 4.021 9 C -0.488 4.488 10 H 0.026 0.974 11 C 0.032 3.968 12 N -0.954 5.954 13 Si 0.933 3.067 14 H -0.305 1.305 15 H -0.318 1.318 16 H -0.176 1.176 17 C -0.191 4.191 18 C -0.170 4.170 19 H 0.243 0.757 20 H 0.100 0.900 21 H 0.103 0.897 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.337 0.663 27 H 0.020 0.980 28 H 0.077 0.923 29 H 0.261 0.739 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 13.938 -7.858 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.217 4.217 3 C -0.042 4.042 4 C -0.149 4.149 5 C -0.068 4.068 6 N -0.327 5.327 7 C -0.018 4.018 8 C -0.022 4.022 9 C -0.526 4.526 10 H 0.044 0.956 11 C -0.166 4.166 12 N -0.594 5.594 13 Si 0.760 3.240 14 H -0.234 1.234 15 H -0.247 1.247 16 H -0.096 1.096 17 C -0.228 4.228 18 C -0.208 4.208 19 H 0.259 0.741 20 H 0.118 0.882 21 H 0.122 0.878 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.156 0.844 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.655 13.718 -8.485 16.347 hybrid contribution -0.636 -0.645 0.864 1.252 sum -3.290 13.074 -7.621 15.486 Atomic orbital electron populations 1.25707 0.97007 1.00009 1.00737 1.23800 0.95738 1.01226 1.00973 1.18713 0.83980 0.97174 1.04361 1.21468 0.95294 0.96592 1.01548 1.22009 0.93991 0.89318 1.01479 1.60593 1.06705 1.18070 1.47375 1.21350 0.87534 0.94298 0.98647 1.19418 0.95156 0.93950 0.93646 1.20431 1.12321 1.24411 0.95411 0.95594 1.25755 0.96398 0.93671 1.00746 1.70069 1.23799 1.29783 1.35736 0.86116 0.74637 0.81621 0.81623 1.23381 1.24738 1.09623 1.22877 1.05583 0.99507 0.94784 1.22943 0.91695 1.02794 1.03367 0.74071 0.88227 0.87839 0.92355 0.93211 0.94680 0.89662 0.84443 0.96181 0.90510 0.93011 0.92134 0.87986 0.87391 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.76 19.25 74.32 1.43 -3.33 16 2 C -0.22 -5.32 13.34 31.13 0.42 -4.91 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.05 16 4 C -0.11 -2.99 5.39 30.59 0.16 -2.83 16 5 C 0.06 1.68 5.69 86.30 0.49 2.17 16 6 N -0.70 -25.88 3.86 -513.89 -1.99 -27.86 16 7 C 0.11 4.12 5.61 86.30 0.48 4.60 16 8 C -0.02 -0.91 1.37 -52.93 -0.07 -0.98 16 9 C -0.49 -27.43 8.73 25.60 0.22 -27.21 16 10 H 0.03 1.65 8.06 -2.91 -0.02 1.62 16 11 C 0.03 1.84 5.13 84.66 0.43 2.28 16 12 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 13 Si 0.93 46.01 23.18 68.60 1.59 47.60 16 14 H -0.31 -15.30 7.08 99.48 0.70 -14.60 16 15 H -0.32 -16.28 7.11 99.48 0.71 -15.57 16 16 H -0.18 -7.72 5.17 99.48 0.51 -7.21 16 17 C -0.19 -7.73 7.06 30.62 0.22 -7.51 16 18 C -0.17 -6.52 9.96 30.62 0.30 -6.22 16 19 H 0.24 3.36 7.80 -4.42 -0.03 3.33 16 20 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 21 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 25 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.34 14.51 7.24 -89.70 -0.65 13.87 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 2.42 8.08 -2.39 -0.02 2.40 16 29 H 0.26 15.77 8.31 -92.70 -0.77 15.00 16 30 H 0.06 2.72 6.31 -2.39 -0.02 2.71 16 31 H 0.10 3.57 8.14 -2.39 -0.02 3.56 16 32 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 33 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -66.98 274.80 4.38 -62.60 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.22 Total: 21.68 kcal Atomic # 6 Polarization: -48.15 SS G_CDS: 4.26 Total: -43.89 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -1.69 Total: -87.98 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.59 Total: 47.60 kcal Total: -66.98 4.38 -62.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229839392.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.726 kcal (2) G-P(sol) polarization free energy of solvation -66.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds