Wall clock time and date at job start Mon Mar 30 2020 02:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46952 * 276.26544 * 3 2 1 5 5 C 1.53003 * 109.47197 * 156.26588 * 3 2 1 6 6 C 1.52997 * 109.47083 * 176.04581 * 5 3 2 7 7 N 1.46902 * 109.47444 * 36.26541 * 3 2 1 8 8 C 1.46908 * 110.99601 * 276.95714 * 7 3 2 9 9 C 1.53004 * 109.46536 * 175.72514 * 8 7 3 10 10 C 1.50697 * 115.54976 * 39.58375 * 9 8 7 11 11 H 1.08004 * 119.99466 * 267.92492 * 10 9 8 12 12 C 1.37870 * 120.00216 * 87.93337 * 10 9 8 13 13 N 1.31514 * 120.00268 * 179.33766 * 12 10 9 14 14 Si 1.86808 * 120.00100 * 359.33747 * 12 10 9 15 15 H 1.48497 * 109.46896 * 91.65433 * 14 12 10 16 16 H 1.48497 * 109.47158 * 211.65526 * 14 12 10 17 17 H 1.48500 * 109.46662 * 331.65592 * 14 12 10 18 18 C 1.52999 * 117.49768 * 253.86705 * 9 8 7 19 19 C 1.52992 * 60.00245 * 252.51799 * 18 9 8 20 20 H 4.18736 * 15.03930 * 359.97438 * 4 2 1 21 21 H 1.09000 * 109.46916 * 296.04610 * 5 3 2 22 22 H 1.08996 * 109.47050 * 56.04597 * 5 3 2 23 23 H 1.09005 * 109.47145 * 185.05454 * 6 5 3 24 24 H 1.08998 * 109.47415 * 305.05107 * 6 5 3 25 25 H 1.09001 * 109.47350 * 65.05564 * 6 5 3 26 26 H 1.00890 * 110.99938 * 40.90933 * 7 3 2 27 27 H 1.09002 * 109.47335 * 295.72702 * 8 7 3 28 28 H 1.09005 * 109.47041 * 55.72927 * 8 7 3 29 29 H 0.97005 * 120.00289 * 179.97438 * 13 12 10 30 30 H 1.09003 * 117.49886 * 0.02562 * 18 9 8 31 31 H 1.09005 * 117.49582 * 145.02267 * 18 9 8 32 32 H 1.09000 * 117.50020 * 252.51556 * 19 18 9 33 33 H 1.09000 * 117.52168 * 107.48028 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0093 -0.1113 1.0215 5 6 3.1553 1.3214 -0.5806 6 6 4.6821 1.3631 -0.4900 7 7 3.1362 -1.1158 -0.8193 8 6 3.1556 -2.3659 -0.0479 9 6 3.5686 -3.5221 -0.9609 10 6 4.6606 -3.2099 -1.9514 11 1 4.4075 -2.8656 -2.9433 12 6 5.9825 -3.3639 -1.5915 13 7 6.9352 -3.1039 -2.4601 14 14 6.4206 -3.9419 0.1300 15 1 6.5401 -5.4221 0.1397 16 1 7.7136 -3.3382 0.5408 17 1 5.3562 -3.5250 1.0779 18 6 2.4778 -4.5024 -1.3967 19 6 3.5301 -4.9344 -0.3736 20 1 -1.0501 0.0005 0.0001 21 1 2.8510 1.4009 -1.6242 22 1 2.7349 2.1530 -0.0152 23 1 5.0391 2.3387 -0.8201 24 1 4.9896 1.1939 0.5419 25 1 5.1053 0.5867 -1.1273 26 1 2.5856 -1.2174 -1.6586 27 1 3.8695 -2.2766 0.7710 28 1 2.1617 -2.5591 0.3560 29 1 7.8653 -3.2119 -2.2068 30 1 1.4659 -4.3235 -1.0333 31 1 2.5497 -4.9217 -2.4004 32 1 4.2944 -5.6378 -0.7040 33 1 3.2110 -5.0397 0.6633 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229969961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:33 Heat of formation + Delta-G solvation = 75.021634 kcal Electronic energy + Delta-G solvation = -13621.944991 eV Core-core repulsion = 11456.934115 eV Total energy + Delta-G solvation = -2165.010875 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.80622 -36.17321 -31.94404 -31.92286 -31.68336 -26.77045 -25.33584 -23.57571 -21.63519 -21.12834 -18.96493 -18.05989 -16.25834 -15.20496 -14.93374 -14.53241 -14.26409 -13.33875 -13.16094 -12.76905 -12.47859 -12.14320 -11.94402 -11.48542 -11.05539 -10.97600 -10.50568 -10.46335 -10.42729 -10.27671 -10.04374 -9.80887 -9.45165 -9.01988 -8.42006 -8.39240 -7.71722 -5.95227 -3.94301 2.99027 3.01626 3.37801 3.46967 3.50981 4.52188 4.55478 4.73743 5.04431 5.33774 5.42321 5.50428 5.77452 5.88668 5.95014 6.04886 6.14323 6.19911 6.24748 6.31221 6.35355 6.48399 6.54506 6.60729 6.76252 6.99205 7.06676 7.16009 7.73842 7.78794 7.89942 8.11170 8.64379 9.07019 9.69169 11.17364 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.027780 B = 0.012108 C = 0.009711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.687069 B = 2312.001363 C = 2882.510754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.199 4.199 3 C 0.183 3.817 4 H 0.091 0.909 5 C -0.099 4.099 6 C -0.145 4.145 7 N -0.636 5.636 8 C 0.094 3.906 9 C 0.002 3.998 10 C -0.457 4.457 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.285 1.285 16 H -0.297 1.297 17 H -0.260 1.260 18 C -0.186 4.186 19 C -0.201 4.201 20 H 0.211 0.789 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.345 0.655 27 H 0.065 0.935 28 H 0.006 0.994 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.508 5.157 5.746 11.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.201 4.201 3 C 0.073 3.927 4 H 0.109 0.891 5 C -0.137 4.137 6 C -0.202 4.202 7 N -0.265 5.265 8 C -0.035 4.035 9 C 0.001 3.999 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.122 4.122 13 N -0.541 5.541 14 Si 0.710 3.290 15 H -0.211 1.211 16 H -0.224 1.224 17 H -0.185 1.185 18 C -0.224 4.224 19 C -0.239 4.239 20 H 0.228 0.772 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.101 0.899 26 H 0.164 0.836 27 H 0.083 0.917 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.588 5.293 5.821 10.931 hybrid contribution -0.916 -0.654 1.054 1.542 sum -8.504 4.639 6.875 11.879 Atomic orbital electron populations 1.24895 0.95913 1.01516 1.01918 1.24899 0.96023 0.99627 0.99561 1.19051 0.80780 0.94090 0.98779 0.89123 1.21391 0.97084 0.94231 1.01007 1.21669 0.94623 1.01717 1.02194 1.60654 1.55700 1.03250 1.06864 1.21764 0.96547 0.89483 0.95717 1.19514 0.97258 0.85966 0.97147 1.20016 0.87798 1.43754 0.97929 0.90569 1.24859 0.96237 0.94691 0.96401 1.69890 0.99810 1.49720 1.34697 0.86877 0.77386 0.78394 0.86390 1.21146 1.22437 1.18511 1.22891 0.93019 1.07615 0.98840 1.22930 1.02723 1.01830 0.96422 0.77177 0.91766 0.92600 0.93764 0.93515 0.89900 0.83643 0.91665 0.97607 0.92920 0.91437 0.89601 0.89419 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.10 19.25 29.55 0.57 -2.54 16 2 C -0.20 -3.13 12.22 -37.12 -0.45 -3.59 16 3 C 0.18 3.00 2.45 -70.50 -0.17 2.82 16 4 H 0.09 1.47 7.88 -51.93 -0.41 1.06 16 5 C -0.10 -1.46 5.57 -26.73 -0.15 -1.61 16 6 C -0.14 -2.25 9.73 37.16 0.36 -1.88 16 7 N -0.64 -12.35 5.08 -109.69 -0.56 -12.91 16 8 C 0.09 1.95 5.39 -3.82 -0.02 1.93 16 9 C 0.00 0.05 1.10 -155.66 -0.17 -0.12 16 10 C -0.46 -12.43 8.75 -34.44 -0.30 -12.73 16 11 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 12 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 13 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 14 Si 0.88 21.94 25.04 -169.99 -4.26 17.68 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 17 H -0.26 -6.15 5.37 56.52 0.30 -5.84 16 18 C -0.19 -3.82 9.88 -26.74 -0.26 -4.08 16 19 C -0.20 -4.33 7.53 -26.73 -0.20 -4.53 16 20 H 0.21 2.11 7.80 -54.09 -0.42 1.69 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.56 7.87 -51.93 -0.41 1.15 16 26 H 0.34 6.76 8.43 -39.30 -0.33 6.43 16 27 H 0.07 1.41 6.47 -51.93 -0.34 1.08 16 28 H 0.01 0.11 7.63 -51.93 -0.40 -0.28 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 31 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 32 H 0.09 1.98 7.12 -51.93 -0.37 1.61 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 277.52 15.07 4.18 4.18 Total: -1.00 -29.21 277.52 -6.04 -35.25 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.29 Total: 6.57 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -0.90 Total: -24.17 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.22 Total: -39.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.26 Total: 17.68 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.21 -6.04 -35.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229969961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.276 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds