Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09001 * 109.46952 * 276.26544 * 3 2 1 5 5 C 1.53003 * 109.47197 * 156.26588 * 3 2 1 6 6 C 1.52997 * 109.47083 * 176.04581 * 5 3 2 7 7 N 1.46902 * 109.47444 * 36.26541 * 3 2 1 8 8 C 1.46908 * 110.99601 * 276.95714 * 7 3 2 9 9 C 1.53004 * 109.46536 * 175.72514 * 8 7 3 10 10 C 1.50697 * 115.54976 * 39.58375 * 9 8 7 11 11 H 1.08004 * 119.99466 * 267.92492 * 10 9 8 12 12 C 1.37870 * 120.00216 * 87.93337 * 10 9 8 13 13 N 1.31514 * 120.00268 * 179.33766 * 12 10 9 14 14 Si 1.86808 * 120.00100 * 359.33747 * 12 10 9 15 15 H 1.48497 * 109.46896 * 91.65433 * 14 12 10 16 16 H 1.48497 * 109.47158 * 211.65526 * 14 12 10 17 17 H 1.48500 * 109.46662 * 331.65592 * 14 12 10 18 18 C 1.52999 * 117.49768 * 253.86705 * 9 8 7 19 19 C 1.52992 * 60.00245 * 252.51799 * 18 9 8 20 20 H 4.18736 * 15.03930 * 359.97438 * 4 2 1 21 21 H 1.09000 * 109.46916 * 296.04610 * 5 3 2 22 22 H 1.08996 * 109.47050 * 56.04597 * 5 3 2 23 23 H 1.09005 * 109.47145 * 185.05454 * 6 5 3 24 24 H 1.08998 * 109.47415 * 305.05107 * 6 5 3 25 25 H 1.09001 * 109.47350 * 65.05564 * 6 5 3 26 26 H 1.00890 * 110.99938 * 40.90933 * 7 3 2 27 27 H 1.09002 * 109.47335 * 295.72702 * 8 7 3 28 28 H 1.09005 * 109.47041 * 55.72927 * 8 7 3 29 29 H 0.97005 * 120.00289 * 179.97438 * 13 12 10 30 30 H 1.09003 * 117.49886 * 0.02562 * 18 9 8 31 31 H 1.09005 * 117.49582 * 145.02267 * 18 9 8 32 32 H 1.09000 * 117.50020 * 252.51556 * 19 18 9 33 33 H 1.09000 * 117.52168 * 107.48028 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0093 -0.1113 1.0215 5 6 3.1553 1.3214 -0.5806 6 6 4.6821 1.3631 -0.4900 7 7 3.1362 -1.1158 -0.8193 8 6 3.1556 -2.3659 -0.0479 9 6 3.5686 -3.5221 -0.9609 10 6 4.6606 -3.2099 -1.9514 11 1 4.4075 -2.8656 -2.9433 12 6 5.9825 -3.3639 -1.5915 13 7 6.9352 -3.1039 -2.4601 14 14 6.4206 -3.9419 0.1300 15 1 6.5401 -5.4221 0.1397 16 1 7.7136 -3.3382 0.5408 17 1 5.3562 -3.5250 1.0779 18 6 2.4778 -4.5024 -1.3967 19 6 3.5301 -4.9344 -0.3736 20 1 -1.0501 0.0005 0.0001 21 1 2.8510 1.4009 -1.6242 22 1 2.7349 2.1530 -0.0152 23 1 5.0391 2.3387 -0.8201 24 1 4.9896 1.1939 0.5419 25 1 5.1053 0.5867 -1.1273 26 1 2.5856 -1.2174 -1.6586 27 1 3.8695 -2.2766 0.7710 28 1 2.1617 -2.5591 0.3560 29 1 7.8653 -3.2119 -2.2068 30 1 1.4659 -4.3235 -1.0333 31 1 2.5497 -4.9217 -2.4004 32 1 4.2944 -5.6378 -0.7040 33 1 3.2110 -5.0397 0.6633 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229969961.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = 56.562471 kcal Electronic energy + Delta-G solvation = -13622.745440 eV Core-core repulsion = 11456.934115 eV Total energy + Delta-G solvation = -2165.811325 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37646 -37.65914 -34.09008 -33.14260 -33.02261 -28.32169 -27.23959 -25.10622 -23.30809 -22.37866 -20.80468 -19.26605 -18.19101 -16.93661 -16.28032 -16.13370 -15.71906 -14.96187 -14.77232 -14.53768 -14.16346 -13.71618 -13.44258 -12.99152 -12.74264 -12.37554 -12.26378 -12.09811 -11.89055 -11.71430 -11.51924 -11.35582 -11.01272 -10.87450 -10.50146 -10.20738 -9.17883 -8.14679 -6.16284 1.39184 1.42693 1.53877 1.85957 1.90294 2.47029 3.13376 3.21727 3.44111 3.53417 4.16893 4.19060 4.30777 4.38024 4.45181 4.57547 4.64403 4.74991 4.85199 4.87581 5.02240 5.09700 5.12589 5.17113 5.30813 5.39152 5.49563 5.64864 5.81417 6.29399 6.46640 6.59727 6.69557 6.87805 7.50107 9.01692 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.027780 B = 0.012108 C = 0.009711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.687069 B = 2312.001363 C = 2882.510754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.245 4.245 3 C 0.186 3.814 4 H 0.091 0.909 5 C -0.093 4.093 6 C -0.140 4.140 7 N -0.656 5.656 8 C 0.106 3.894 9 C -0.025 4.025 10 C -0.444 4.444 11 H 0.032 0.968 12 C 0.022 3.978 13 N -0.954 5.954 14 Si 0.936 3.064 15 H -0.279 1.279 16 H -0.305 1.305 17 H -0.235 1.235 18 C -0.168 4.168 19 C -0.197 4.197 20 H 0.247 0.753 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.340 0.660 27 H 0.055 0.945 28 H 0.024 0.976 29 H 0.259 0.741 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 5.295 7.837 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.247 4.247 3 C 0.076 3.924 4 H 0.109 0.891 5 C -0.131 4.131 6 C -0.198 4.198 7 N -0.284 5.284 8 C -0.023 4.023 9 C -0.026 4.026 10 C -0.482 4.482 11 H 0.050 0.950 12 C -0.174 4.174 13 N -0.596 5.596 14 Si 0.763 3.237 15 H -0.205 1.205 16 H -0.232 1.232 17 H -0.158 1.158 18 C -0.205 4.205 19 C -0.235 4.235 20 H 0.264 0.736 21 H 0.076 0.924 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.158 0.842 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.937 5.431 7.926 13.823 hybrid contribution -0.302 -0.650 0.303 0.778 sum -10.239 4.781 8.230 13.979 Atomic orbital electron populations 1.25748 0.96712 0.99077 0.99549 1.24810 0.96260 1.01875 1.01740 1.18960 0.81891 0.93328 0.98199 0.89135 1.21366 0.96246 0.94505 1.01012 1.21598 0.95364 1.01263 1.01527 1.60593 1.56788 1.03739 1.07266 1.21545 0.97019 0.88983 0.94767 1.19467 0.97562 0.87729 0.97817 1.20106 0.89186 1.41814 0.97109 0.95020 1.25624 0.96266 0.95380 1.00117 1.70044 1.00123 1.52426 1.36985 0.85969 0.77326 0.78038 0.82402 1.20484 1.23240 1.15847 1.22903 0.93942 1.05184 0.98452 1.22965 1.02644 0.99723 0.98152 0.73635 0.92363 0.90098 0.91894 0.93054 0.94024 0.84220 0.92685 0.95751 0.93182 0.88358 0.90474 0.90928 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.60 19.25 74.32 1.43 -3.17 16 2 C -0.24 -7.08 12.22 31.13 0.38 -6.70 16 3 C 0.19 5.83 2.45 43.11 0.11 5.94 16 4 H 0.09 2.79 7.88 -2.39 -0.02 2.77 16 5 C -0.09 -2.64 5.57 30.59 0.17 -2.47 16 6 C -0.14 -4.31 9.73 71.98 0.70 -3.61 16 7 N -0.66 -25.20 5.08 -500.97 -2.54 -27.74 16 8 C 0.11 4.20 5.39 86.30 0.47 4.67 16 9 C -0.02 -1.10 1.10 -52.93 -0.06 -1.16 16 10 C -0.44 -24.73 8.75 25.60 0.22 -24.50 16 11 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 12 C 0.02 1.28 5.47 84.65 0.46 1.74 16 13 N -0.95 -60.22 13.96 21.44 0.30 -59.93 16 14 Si 0.94 45.31 25.04 68.60 1.72 47.03 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 17 H -0.24 -10.33 5.37 99.48 0.53 -9.80 16 18 C -0.17 -6.47 9.88 30.59 0.30 -6.16 16 19 C -0.20 -7.94 7.53 30.59 0.23 -7.71 16 20 H 0.25 3.67 7.80 -4.41 -0.03 3.63 16 21 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.04 1.61 7.87 -2.39 -0.02 1.59 16 26 H 0.34 13.36 8.43 -89.70 -0.76 12.60 16 27 H 0.05 2.27 6.47 -2.39 -0.02 2.25 16 28 H 0.02 0.88 7.63 -2.38 -0.02 0.86 16 29 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 30 H 0.10 3.21 8.08 -2.39 -0.02 3.19 16 31 H 0.08 3.09 8.14 -2.38 -0.02 3.07 16 32 H 0.07 3.15 7.12 -2.39 -0.02 3.13 16 33 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -64.43 277.52 4.03 -60.41 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.14 Total: 23.37 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 4.41 Total: -43.15 kcal Atomic # 7 Polarization: -85.42 SS G_CDS: -2.25 Total: -87.67 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.72 Total: 47.03 kcal Total: -64.43 4.03 -60.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229969961.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.969 kcal (2) G-P(sol) polarization free energy of solvation -64.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds