Wall clock time and date at job start Mon Mar 30 2020 02:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.50697 * 109.46908 * 180.02562 * 13 12 2 15 15 C 1.38602 * 120.08049 * 95.00175 * 14 13 12 16 16 C 1.38889 * 117.97066 * 180.02562 * 15 14 13 17 17 C 1.38603 * 117.96690 * 359.97438 * 16 15 14 18 18 N 1.31928 * 119.85012 * 0.02562 * 17 16 15 19 19 N 1.28354 * 122.18275 * 359.71307 * 18 17 16 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 24 24 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 25 25 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 26 26 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 27 27 H 1.08002 * 121.01601 * 359.97438 * 15 14 13 28 28 H 1.08001 * 121.01638 * 180.02562 * 16 15 14 29 29 H 1.08007 * 120.07222 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5216 -3.5560 15 6 1.6902 -1.0656 -4.4616 16 6 2.2034 -1.7431 -5.5601 17 6 3.5810 -1.8328 -5.6830 18 7 4.3589 -1.2831 -4.7702 19 7 3.8846 -0.6528 -3.7576 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7096 1.1617 3.4844 24 1 2.9173 -1.1204 -1.0288 25 1 1.0870 0.6164 -2.5525 26 1 2.7588 1.0463 -2.1182 27 1 0.6245 -0.9664 -4.3171 28 1 1.5489 -2.1857 -6.2965 29 1 4.0167 -2.3515 -6.5242 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235075364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:29 Heat of formation + Delta-G solvation = 31.545025 kcal Electronic energy + Delta-G solvation = -12880.352025 eV Core-core repulsion = 10609.915519 eV Total energy + Delta-G solvation = -2270.436506 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.90232 -37.90914 -35.14699 -34.00733 -33.34355 -30.38269 -27.52934 -26.66561 -25.47228 -23.46549 -21.76100 -18.74674 -18.34916 -17.70327 -17.01660 -16.36619 -16.08738 -15.74545 -15.12539 -14.68898 -14.19941 -13.97525 -13.52891 -13.18211 -12.86587 -12.71931 -12.36647 -12.20029 -12.11083 -11.65015 -11.11694 -10.97554 -10.79887 -10.60031 -10.55722 -9.18622 -8.15360 -6.29096 -0.06431 0.01331 1.40527 1.42236 1.54218 2.40167 2.61185 3.05115 3.13565 3.59194 3.77311 3.78208 3.92088 4.16428 4.36589 4.50557 4.68375 4.83223 4.92801 5.08407 5.19287 5.21747 5.37709 5.45904 5.63964 5.84032 6.21267 6.35993 6.65839 6.90627 7.40898 7.79132 8.90464 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.057108 B = 0.006692 C = 0.006292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.178321 B = 4182.799554 C = 4449.133306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.026 1.026 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.277 1.277 12 N -0.676 5.676 13 C 0.113 3.887 14 C 0.070 3.930 15 C -0.107 4.107 16 C -0.102 4.102 17 C 0.030 3.970 18 N -0.286 5.286 19 N -0.286 5.286 20 H 0.058 0.942 21 H 0.030 0.970 22 H 0.031 0.969 23 H 0.264 0.736 24 H 0.329 0.671 25 H 0.099 0.901 26 H 0.028 0.972 27 H 0.173 0.827 28 H 0.198 0.802 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -4.406 -15.383 16.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.008 1.008 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.202 1.202 12 N -0.307 5.307 13 C -0.018 4.018 14 C -0.076 4.076 15 C -0.136 4.136 16 C -0.131 4.131 17 C -0.135 4.135 18 N -0.126 5.126 19 N -0.128 5.128 20 H 0.077 0.923 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.073 0.927 24 H 0.146 0.854 25 H 0.117 0.883 26 H 0.046 0.954 27 H 0.190 0.810 28 H 0.215 0.785 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.068 -4.211 -14.880 15.464 hybrid contribution -0.301 0.116 0.832 0.892 sum -0.368 -4.096 -14.048 14.637 Atomic orbital electron populations 1.21536 0.96823 0.99162 0.99565 1.18999 0.93314 0.90906 0.86233 1.00835 1.21577 1.31786 1.12717 0.91762 0.92773 1.25687 0.95118 0.95681 1.01893 1.70010 1.37321 1.23855 1.24218 0.85446 0.78180 0.78536 0.79089 1.19466 1.20580 1.20224 1.60782 1.32092 1.32568 1.05234 1.20763 1.00484 0.92843 0.87667 1.22858 0.91536 0.96313 0.96890 1.22627 1.02940 0.94737 0.93297 1.22939 0.96666 0.95593 0.97855 1.24979 0.92925 0.96459 0.99143 1.72906 1.34123 1.06160 0.99364 1.72858 1.14244 1.11895 1.13832 0.92336 0.95115 0.95030 0.92705 0.85406 0.88261 0.95414 0.80950 0.78498 0.77426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.46 9.19 71.98 0.66 -4.80 15 2 C 0.21 11.00 2.60 44.17 0.11 11.11 15 3 H -0.03 -1.47 7.80 -2.39 -0.02 -1.49 15 4 C -0.54 -30.34 8.59 25.60 0.22 -30.12 15 5 H 0.05 3.04 7.62 -2.91 -0.02 3.02 15 6 C 0.02 0.88 5.30 84.66 0.45 1.33 15 7 N -0.91 -52.69 11.32 21.45 0.24 -52.45 15 8 Si 0.96 44.12 29.54 68.60 2.03 46.14 15 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 12 N -0.68 -29.60 6.29 -499.47 -3.14 -32.74 15 13 C 0.11 4.15 5.82 85.56 0.50 4.65 15 14 C 0.07 2.25 6.38 42.63 0.27 2.53 15 15 C -0.11 -2.46 9.85 22.51 0.22 -2.24 15 16 C -0.10 -1.69 10.21 22.51 0.23 -1.46 15 17 C 0.03 0.61 11.31 84.77 0.96 1.57 15 18 N -0.29 -8.94 11.50 -57.26 -0.66 -9.60 15 19 N -0.29 -10.35 11.43 -47.63 -0.54 -10.90 15 20 H 0.06 3.13 6.07 -2.39 -0.01 3.12 15 21 H 0.03 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.03 1.31 7.45 -2.38 -0.02 1.29 15 23 H 0.26 14.33 8.31 -92.71 -0.77 13.56 15 24 H 0.33 15.16 8.22 -89.70 -0.74 14.42 15 25 H 0.10 3.25 7.35 -2.38 -0.02 3.23 15 26 H 0.03 1.10 8.06 -2.39 -0.02 1.08 15 27 H 0.17 3.09 8.06 -2.91 -0.02 3.06 15 28 H 0.20 1.27 8.06 -2.91 -0.02 1.25 15 29 H 0.21 2.27 8.06 -2.91 -0.02 2.25 15 Total: -1.00 -67.66 253.85 1.96 -65.70 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.41 Total: 11.29 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 3.63 Total: -17.44 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.10 Total: -105.69 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.66 1.96 -65.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235075364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.246 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds