Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.38621 * 120.44366 * 94.99842 * 14 13 12 16 16 C 1.38579 * 118.39502 * 179.97438 * 15 14 13 17 17 N 1.32349 * 119.10599 * 359.97438 * 16 15 14 18 18 C 1.31776 * 120.82236 * 0.02562 * 17 16 15 19 19 N 1.31820 * 121.75255 * 359.71570 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 24 24 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 25 25 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 26 26 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 27 27 H 1.07995 * 120.80537 * 0.02562 * 15 14 13 28 28 H 1.07997 * 120.44888 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.12953 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.6987 -1.0694 -4.4667 16 6 2.2104 -1.7445 -5.5634 17 7 3.5228 -1.8428 -5.7040 18 6 4.3387 -1.3092 -4.8175 19 7 3.8881 -0.6558 -3.7650 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7082 1.1609 3.4844 24 1 1.4496 -1.4980 -1.4101 25 1 1.0871 0.6162 -2.5525 26 1 2.7589 1.0461 -2.1182 27 1 0.6325 -0.9717 -4.3255 28 1 1.5473 -2.1838 -6.2939 29 1 5.4050 -1.4054 -4.9594 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235075421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 46.694005 kcal Electronic energy + Delta-G solvation = -12879.599848 eV Core-core repulsion = 10609.820251 eV Total energy + Delta-G solvation = -2269.779597 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.82498 -36.33068 -33.86739 -32.64555 -31.67727 -28.76361 -25.55234 -25.03905 -24.24322 -22.10170 -20.27020 -17.39867 -17.08169 -15.99970 -15.37722 -14.97972 -14.62530 -14.14847 -13.63344 -13.51638 -13.00022 -12.33907 -11.80377 -11.55499 -10.94662 -10.85515 -10.75333 -10.65248 -10.42764 -10.17834 -9.96710 -9.50787 -9.14180 -8.97906 -8.37801 -7.34962 -6.00443 -4.03529 1.01804 1.18667 3.33290 3.39214 3.43683 3.88915 4.21162 4.26343 4.44041 4.59691 5.09919 5.17275 5.31525 5.39070 5.54583 5.76044 5.96321 6.12277 6.50347 6.62481 6.77086 7.00968 7.13678 7.27455 7.68187 7.84335 8.19885 8.24298 8.42842 8.53851 9.03312 9.61745 11.06736 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.057094 B = 0.006667 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.303650 B = 4198.586725 C = 4461.026466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.037 0.963 4 C -0.495 4.495 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.672 5.672 13 C 0.102 3.898 14 C 0.196 3.804 15 C -0.227 4.227 16 C 0.142 3.858 17 N -0.533 5.533 18 C 0.290 3.710 19 N -0.500 5.500 20 H 0.005 0.995 21 H 0.091 0.909 22 H 0.028 0.972 23 H 0.260 0.740 24 H 0.325 0.675 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.144 0.856 28 H 0.164 0.836 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -2.453 -12.681 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.533 4.533 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.302 5.302 13 C -0.028 4.028 14 C 0.049 3.951 15 C -0.250 4.250 16 C -0.023 4.023 17 N -0.248 5.248 18 C 0.002 3.998 19 N -0.214 5.214 20 H 0.024 0.976 21 H 0.110 0.890 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.141 0.859 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.162 0.838 28 H 0.181 0.819 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.598 -2.320 -12.486 12.800 hybrid contribution -1.622 -0.276 0.738 1.803 sum -0.023 -2.596 -11.748 12.032 Atomic orbital electron populations 1.22454 1.00518 0.99321 1.00660 1.19234 0.89674 0.94604 0.86015 0.94501 1.21128 1.30239 1.12531 0.89444 0.91892 1.24941 0.95286 0.95222 0.99053 1.69875 1.37261 1.23231 1.23421 0.86479 0.78473 0.80014 0.82302 1.20702 1.21412 1.19940 1.60837 1.58345 1.08594 1.02435 1.20916 0.98755 0.95535 0.87616 1.21971 0.88653 0.90440 0.94059 1.22837 1.02667 1.01991 0.97482 1.23127 0.91829 0.92240 0.95117 1.68371 1.04914 1.20689 1.30786 1.25001 1.00708 0.88854 0.85259 1.68341 1.16452 1.16152 1.20460 0.97558 0.89032 0.95236 0.93022 0.85855 0.94010 0.89317 0.83803 0.81871 0.79037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.94 37.16 0.33 -3.62 15 2 C 0.21 5.25 2.57 -68.86 -0.18 5.07 15 3 H 0.04 1.00 7.80 -51.93 -0.40 0.59 15 4 C -0.49 -13.69 8.84 -34.44 -0.30 -13.99 15 5 H 0.06 1.78 7.81 -52.49 -0.41 1.37 15 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 15 7 N -0.90 -25.48 11.32 55.43 0.63 -24.85 15 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 15 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 12 N -0.67 -14.22 6.22 -109.21 -0.68 -14.89 15 13 C 0.10 1.81 5.84 -4.97 -0.03 1.78 15 14 C 0.20 3.13 6.34 -82.24 -0.52 2.61 15 15 C -0.23 -2.92 9.84 -39.31 -0.39 -3.31 15 16 C 0.14 1.69 11.30 -17.20 -0.19 1.49 15 17 N -0.53 -7.25 10.44 -14.58 -0.15 -7.40 15 18 C 0.29 4.06 12.29 -92.15 -1.13 2.93 15 19 N -0.50 -8.33 10.38 -10.79 -0.11 -8.44 15 20 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 15 21 H 0.09 2.38 6.07 -51.93 -0.32 2.06 15 22 H 0.03 0.65 8.13 -51.93 -0.42 0.23 15 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 24 H 0.33 6.51 8.46 -39.29 -0.33 6.18 15 25 H 0.04 0.68 7.36 -51.93 -0.38 0.30 15 26 H 0.09 1.67 8.06 -51.93 -0.42 1.25 15 27 H 0.14 1.51 8.06 -52.49 -0.42 1.08 15 28 H 0.16 1.32 8.06 -52.49 -0.42 0.90 15 29 H 0.19 2.05 8.06 -52.49 -0.42 1.62 15 LS Contribution 254.10 15.07 3.83 3.83 Total: -1.00 -30.18 254.10 -7.49 -37.67 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.48 Total: 3.15 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -2.51 Total: -5.60 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.32 Total: -55.58 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.18 -7.49 -37.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235075421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.363 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds