Wall clock time and date at job start Mon Mar 30 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.38621 * 120.44366 * 94.99842 * 14 13 12 16 16 C 1.38579 * 118.39502 * 179.97438 * 15 14 13 17 17 N 1.32349 * 119.10599 * 359.97438 * 16 15 14 18 18 C 1.31776 * 120.82236 * 0.02562 * 17 16 15 19 19 N 1.31820 * 121.75255 * 359.71570 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 24 24 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 25 25 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 26 26 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 27 27 H 1.07995 * 120.80537 * 0.02562 * 15 14 13 28 28 H 1.07997 * 120.44888 * 180.02562 * 16 15 14 29 29 H 1.07999 * 119.12953 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 1.6987 -1.0694 -4.4667 16 6 2.2104 -1.7445 -5.5634 17 7 3.5228 -1.8428 -5.7040 18 6 4.3387 -1.3092 -4.8175 19 7 3.8881 -0.6558 -3.7650 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7082 1.1609 3.4844 24 1 1.4496 -1.4980 -1.4101 25 1 1.0871 0.6162 -2.5525 26 1 2.7589 1.0461 -2.1182 27 1 0.6325 -0.9717 -4.3255 28 1 1.5473 -2.1838 -6.2939 29 1 5.4050 -1.4054 -4.9594 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235075421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:35 Heat of formation + Delta-G solvation = 26.063989 kcal Electronic energy + Delta-G solvation = -12880.494433 eV Core-core repulsion = 10609.820251 eV Total energy + Delta-G solvation = -2270.674182 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.89161 -38.01242 -35.32319 -34.13496 -33.06940 -30.43380 -27.29434 -26.80677 -25.27313 -23.35455 -22.18119 -18.68742 -18.47136 -17.60435 -16.77794 -16.34212 -16.13589 -15.54599 -15.13707 -14.89952 -14.39470 -13.97443 -13.58981 -13.25690 -12.85231 -12.72311 -12.40788 -12.15776 -11.96828 -11.79327 -11.58212 -11.08726 -10.57096 -10.48659 -10.14829 -9.03613 -8.10446 -6.21189 -0.03512 0.14739 1.43014 1.44080 1.54517 2.43782 2.81400 3.11651 3.18217 3.31923 3.53216 3.86893 4.05581 4.20403 4.44711 4.62246 4.67798 4.79963 4.82735 4.92001 5.07079 5.39097 5.48769 5.69579 5.80200 6.10364 6.25551 6.58265 6.74281 6.91558 7.18309 7.48401 8.94968 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.057094 B = 0.006667 C = 0.006275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.303650 B = 4198.586725 C = 4461.026466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.517 4.517 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.271 1.271 12 N -0.680 5.680 13 C 0.108 3.892 14 C 0.171 3.829 15 C -0.218 4.218 16 C 0.149 3.851 17 N -0.540 5.540 18 C 0.283 3.717 19 N -0.536 5.536 20 H 0.033 0.967 21 H 0.063 0.937 22 H 0.034 0.966 23 H 0.262 0.738 24 H 0.333 0.667 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.171 0.829 28 H 0.207 0.793 29 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.540 -3.522 -13.874 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.108 3.892 3 H 0.024 0.976 4 C -0.555 4.555 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.311 5.311 13 C -0.022 4.022 14 C 0.025 3.975 15 C -0.241 4.241 16 C -0.017 4.017 17 N -0.254 5.254 18 C -0.005 4.005 19 N -0.251 5.251 20 H 0.052 0.948 21 H 0.081 0.919 22 H 0.053 0.947 23 H 0.071 0.929 24 H 0.150 0.850 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.189 0.811 28 H 0.223 0.777 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.033 -3.391 -13.693 14.145 hybrid contribution -1.434 0.056 1.006 1.753 sum -0.401 -3.334 -12.687 13.124 Atomic orbital electron populations 1.22236 0.99236 0.99550 1.00564 1.18977 0.90537 0.92778 0.86858 0.97646 1.21418 1.30486 1.12494 0.91149 0.93136 1.25671 0.95431 0.95895 1.01743 1.69991 1.37860 1.24149 1.24055 0.85535 0.77945 0.78995 0.78980 1.20526 1.20649 1.19535 1.60611 1.58401 1.09299 1.02804 1.20798 0.99348 0.94671 0.87362 1.21759 0.89324 0.91996 0.94402 1.23073 1.03524 1.00779 0.96680 1.23845 0.91688 0.90925 0.95218 1.68470 1.05868 1.20583 1.30506 1.25464 1.02002 0.88357 0.84670 1.68263 1.17234 1.17568 1.22046 0.94806 0.91861 0.94699 0.92914 0.85010 0.92166 0.91433 0.81139 0.77659 0.76752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.20 8.94 71.98 0.64 -6.55 15 2 C 0.22 10.86 2.57 44.17 0.11 10.97 15 3 H 0.01 0.31 7.80 -2.39 -0.02 0.29 15 4 C -0.52 -28.97 8.84 25.60 0.23 -28.74 15 5 H 0.05 2.89 7.81 -2.91 -0.02 2.87 15 6 C 0.01 0.61 5.30 84.66 0.45 1.06 15 7 N -0.92 -52.72 11.32 21.45 0.24 -52.48 15 8 Si 0.96 44.29 29.54 68.60 2.03 46.31 15 9 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 12 N -0.68 -28.77 6.22 -499.43 -3.11 -31.88 15 13 C 0.11 3.80 5.84 85.56 0.50 4.30 15 14 C 0.17 5.29 6.34 42.58 0.27 5.56 15 15 C -0.22 -4.99 9.84 22.44 0.22 -4.77 15 16 C 0.15 3.00 11.30 84.70 0.96 3.96 15 17 N -0.54 -13.32 10.44 -200.05 -2.09 -15.40 15 18 C 0.28 7.54 12.29 180.88 2.22 9.76 15 19 N -0.54 -17.58 10.38 -188.07 -1.95 -19.53 15 20 H 0.03 1.32 7.45 -2.39 -0.02 1.30 15 21 H 0.06 3.29 6.07 -2.39 -0.01 3.28 15 22 H 0.03 1.52 8.13 -2.38 -0.02 1.50 15 23 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15 24 H 0.33 13.05 8.46 -89.70 -0.76 12.29 15 25 H 0.06 1.87 7.36 -2.39 -0.02 1.86 15 26 H 0.07 2.62 8.06 -2.39 -0.02 2.60 15 27 H 0.17 2.89 8.06 -2.91 -0.02 2.87 15 28 H 0.21 2.30 8.06 -2.91 -0.02 2.27 15 29 H 0.22 4.31 8.06 -2.91 -0.02 4.29 15 Total: -1.00 -65.06 254.10 1.12 -63.95 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.39 Total: 13.48 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 5.60 Total: -4.45 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -6.90 Total: -119.29 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.06 1.12 -63.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235075421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.009 kcal (2) G-P(sol) polarization free energy of solvation -65.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds