Wall clock time and date at job start Mon Mar 30 2020 02:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08997 * 109.47298 * 2 1 4 4 C 1.50702 * 109.46913 * 240.00133 * 2 1 3 5 5 H 1.08006 * 120.00080 * 274.99700 * 4 2 1 6 6 C 1.37877 * 119.99942 * 95.00366 * 4 2 1 7 7 N 1.31514 * 119.99932 * 184.91300 * 6 4 2 8 8 Si 1.86799 * 119.99914 * 4.91225 * 6 4 2 9 9 H 1.48498 * 109.47386 * 84.83254 * 8 6 4 10 10 H 1.48506 * 109.47116 * 204.83113 * 8 6 4 11 11 H 1.48500 * 109.47281 * 324.82844 * 8 6 4 12 12 N 1.46902 * 109.47501 * 120.00165 * 2 1 3 13 13 C 1.46892 * 110.99874 * 275.00086 * 12 2 1 14 14 C 1.50708 * 109.46887 * 179.97438 * 13 12 2 15 15 C 1.38613 * 120.07431 * 95.30766 * 14 13 12 16 16 C 1.38881 * 117.96809 * 180.24346 * 15 14 13 17 17 C 1.38610 * 117.96388 * 359.45683 * 16 15 14 18 18 N 1.31932 * 119.85071 * 0.28162 * 17 16 15 19 19 N 1.28346 * 122.18331 * 359.97438 * 18 17 16 20 20 H 1.09001 * 109.47076 * 295.05008 * 1 2 3 21 21 H 1.08996 * 109.47449 * 55.05037 * 1 2 3 22 22 H 1.09000 * 109.47516 * 175.05122 * 1 2 3 23 23 H 0.97003 * 119.99807 * 179.97438 * 7 6 4 24 24 H 1.00895 * 111.00128 * 151.03817 * 12 2 1 25 25 H 1.09000 * 109.47508 * 59.99938 * 13 12 2 26 26 H 1.08994 * 109.47373 * 299.99270 * 13 12 2 27 27 H 1.08001 * 121.01618 * 359.97310 * 15 14 13 28 28 H 1.07997 * 121.01413 * 179.74013 * 16 15 14 29 29 H 1.08006 * 120.07155 * 180.30356 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3602 0.0122 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3135 1.8791 -2.3173 9 1 3.5990 2.3949 -1.7820 10 1 2.1058 2.3992 -3.6928 11 1 1.1985 2.3275 -1.4450 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3468 14 6 2.5875 -0.5220 3.5559 15 6 3.9340 -0.4843 3.8825 16 6 4.3525 -1.1903 5.0029 17 6 3.3958 -1.8795 5.7316 18 7 2.1338 -1.8540 5.3480 19 7 1.7479 -1.2057 4.3097 20 1 -0.3633 0.4351 0.9310 21 1 -0.3634 0.5887 -0.8423 22 1 -0.3634 -1.0238 -0.0886 23 1 2.9362 -0.1047 -4.2556 24 1 2.9172 -1.1206 1.0286 25 1 1.0871 0.6162 2.5525 26 1 2.7589 1.0460 2.1182 27 1 4.6370 0.0734 3.2816 28 1 5.3908 -1.1983 5.2998 29 1 3.6829 -2.4358 6.6118 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235431900.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:31 Heat of formation + Delta-G solvation = 54.835750 kcal Electronic energy + Delta-G solvation = -12930.722384 eV Core-core repulsion = 10661.295840 eV Total energy + Delta-G solvation = -2269.426544 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.86981 -36.37440 -33.47118 -32.99281 -31.89943 -29.30673 -25.87736 -24.97479 -24.49969 -22.23752 -19.75516 -17.47085 -17.15116 -16.80153 -15.67979 -14.94147 -14.71439 -13.89829 -13.71594 -13.44132 -13.14281 -12.53425 -12.26916 -11.86233 -11.10583 -11.06547 -10.69118 -10.58804 -10.41116 -10.20981 -9.90321 -9.65610 -9.54442 -9.05417 -8.65625 -7.53789 -6.16551 -4.17764 0.85811 0.98418 3.19533 3.29981 3.31531 3.63423 4.12626 4.32568 4.52011 4.61474 4.71694 4.98634 5.08790 5.29574 5.35036 5.65993 5.77373 5.95385 6.17240 6.26598 6.40030 6.66454 6.80167 6.86030 7.38350 7.57898 7.84280 8.27910 8.57741 8.85738 8.92993 9.46631 10.96355 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.051985 B = 0.007314 C = 0.007118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.483759 B = 3827.597578 C = 3933.010245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.181 3.819 3 H 0.006 0.994 4 C -0.519 4.519 5 H 0.080 0.920 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.674 5.674 13 C 0.105 3.895 14 C 0.088 3.912 15 C -0.116 4.116 16 C -0.121 4.121 17 C 0.025 3.975 18 N -0.246 5.246 19 N -0.225 5.225 20 H 0.023 0.977 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.265 0.735 24 H 0.340 0.660 25 H 0.088 0.912 26 H 0.042 0.958 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.403 2.832 14.529 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.074 3.926 3 H 0.023 0.977 4 C -0.558 4.558 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.306 5.306 13 C -0.026 4.026 14 C -0.057 4.057 15 C -0.146 4.146 16 C -0.150 4.150 17 C -0.139 4.139 18 N -0.087 5.087 19 N -0.067 5.067 20 H 0.042 0.958 21 H 0.060 0.940 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.158 0.842 25 H 0.106 0.894 26 H 0.060 0.940 27 H 0.166 0.834 28 H 0.165 0.835 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.252 2.118 14.767 15.087 hybrid contribution 2.469 1.933 -0.601 3.193 sum 4.721 4.051 14.166 15.472 Atomic orbital electron populations 1.21839 0.97721 1.00979 0.97904 1.19602 0.92754 0.92408 0.87857 0.97653 1.21060 1.43800 0.95950 0.94979 0.90189 1.25034 0.94325 0.98254 0.95298 1.69901 1.45759 1.35872 1.01646 0.86888 0.78961 0.86457 0.77414 1.20352 1.21316 1.18854 1.60722 1.33031 1.32248 1.04638 1.20860 1.01207 0.92892 0.87614 1.23038 0.91127 0.94718 0.96780 1.22391 0.96925 0.98320 0.96919 1.22371 1.01630 0.95982 0.95048 1.24265 0.91226 0.97908 1.00529 1.73069 1.15821 1.11940 1.07866 1.73016 1.31322 1.03023 0.99386 0.95809 0.93959 0.92818 0.92488 0.84175 0.89381 0.94049 0.83397 0.83540 0.81525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.42 37.15 0.35 -2.43 15 2 C 0.18 4.22 2.26 -68.87 -0.16 4.06 15 3 H 0.01 0.13 4.95 -51.93 -0.26 -0.12 15 4 C -0.52 -14.24 8.84 -34.44 -0.30 -14.54 15 5 H 0.08 2.42 8.06 -52.48 -0.42 2.00 15 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 15 7 N -0.89 -26.70 13.96 55.43 0.77 -25.93 15 8 Si 0.88 20.85 26.99 -169.99 -4.59 16.27 15 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 11 H -0.26 -6.05 6.82 56.52 0.39 -5.67 15 12 N -0.67 -13.87 6.29 -109.23 -0.69 -14.56 15 13 C 0.11 1.79 5.82 -4.98 -0.03 1.77 15 14 C 0.09 1.39 6.38 -82.41 -0.53 0.87 15 15 C -0.12 -1.43 9.85 -39.21 -0.39 -1.81 15 16 C -0.12 -1.24 10.21 -39.21 -0.40 -1.64 15 17 C 0.03 0.29 11.31 -17.37 -0.20 0.09 15 18 N -0.25 -3.89 11.50 30.55 0.35 -3.54 15 19 N -0.22 -3.96 11.43 33.60 0.38 -3.58 15 20 H 0.02 0.46 7.35 -51.93 -0.38 0.08 15 21 H 0.04 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.05 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 24 H 0.34 6.98 8.34 -39.29 -0.33 6.65 15 25 H 0.09 1.53 7.36 -51.93 -0.38 1.14 15 26 H 0.04 0.64 7.97 -51.93 -0.41 0.23 15 27 H 0.15 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.15 0.93 8.06 -52.49 -0.42 0.51 15 29 H 0.17 1.27 8.06 -52.48 -0.42 0.84 15 LS Contribution 253.57 15.07 3.82 3.82 Total: -1.00 -31.43 253.57 -5.14 -36.57 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.45 Total: 2.62 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -1.75 Total: -11.67 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.82 Total: -47.61 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.59 Total: 16.27 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.43 -5.14 -36.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235431900.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.403 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds