Wall clock time and date at job start Mon Mar 30 2020 02:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39008 * 120.00337 * 2 1 4 4 C 1.39139 * 119.70247 * 359.97438 * 3 2 1 5 5 C 1.38294 * 119.09527 * 180.02562 * 4 3 2 6 6 C 1.50697 * 120.74797 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47108 * 339.97591 * 6 5 4 8 8 N 1.46898 * 109.47020 * 219.97721 * 6 5 4 9 9 C 1.50699 * 109.47329 * 99.97678 * 6 5 4 10 10 H 1.08004 * 119.99617 * 34.91523 * 9 6 5 11 11 C 1.37879 * 120.00305 * 214.91158 * 9 6 5 12 12 N 1.31510 * 120.00097 * 184.78940 * 11 9 6 13 13 Si 1.86801 * 119.99511 * 4.79132 * 11 9 6 14 14 H 1.48509 * 109.46814 * 84.87570 * 13 11 9 15 15 H 1.48498 * 109.46940 * 204.86877 * 13 11 9 16 16 H 1.48498 * 109.47365 * 324.87611 * 13 11 9 17 17 C 1.38885 * 118.50709 * 359.97438 * 5 4 3 18 18 C 1.38027 * 119.32785 * 0.02562 * 17 5 4 19 19 N 1.31975 * 120.85772 * 359.97438 * 18 17 5 20 20 H 1.09004 * 109.46877 * 299.99700 * 1 2 3 21 21 H 1.09001 * 109.46982 * 59.99215 * 1 2 3 22 22 H 1.08996 * 109.47759 * 180.02562 * 1 2 3 23 23 H 0.97006 * 120.00039 * 180.02562 * 2 1 3 24 24 H 1.07994 * 120.45155 * 0.03986 * 4 3 2 25 25 H 1.00904 * 111.00259 * 173.91507 * 8 6 5 26 26 H 1.00904 * 111.00235 * 297.86648 * 8 6 5 27 27 H 0.96997 * 120.00065 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.33850 * 180.27722 * 17 5 4 29 29 H 1.08004 * 119.57073 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2038 0.0000 4 6 1.4582 2.4052 -0.0005 5 6 2.1624 3.5954 -0.0011 6 6 1.4401 4.9180 -0.0011 7 1 0.4184 4.7740 -0.3526 8 7 2.1365 5.8562 -0.8914 9 6 1.4158 5.4772 1.3981 10 1 2.2555 5.3169 2.0583 11 6 0.3219 6.1935 1.8355 12 7 0.3390 6.7613 3.0215 13 14 -1.1846 6.3572 0.7431 14 1 -2.0614 5.1729 0.9283 15 1 -1.9307 7.5876 1.1102 16 1 -0.7595 6.4412 -0.6772 17 6 3.5503 3.5444 -0.0005 18 6 4.1817 2.3171 0.0000 19 7 3.4840 1.1969 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5140 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.9500 -0.8401 -0.0004 24 1 0.3783 2.4082 -0.0003 25 1 1.6184 6.7169 -0.9864 26 1 3.0754 6.0334 -0.5670 27 1 -0.4304 7.2655 3.3291 28 1 4.1297 4.4559 0.0036 29 1 5.2609 2.2729 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238330521.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:23 Heat of formation + Delta-G solvation = 12.507872 kcal Electronic energy + Delta-G solvation = -13240.433348 eV Core-core repulsion = 10969.171329 eV Total energy + Delta-G solvation = -2271.262019 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.06665 -37.40823 -36.19220 -34.16867 -32.18187 -30.77257 -28.31931 -27.03819 -25.03908 -23.36467 -21.62791 -19.30132 -18.39467 -17.52851 -16.63746 -16.55231 -16.00866 -15.53341 -15.33787 -14.82215 -14.74380 -14.25092 -14.02329 -13.60106 -13.06522 -12.91347 -12.75921 -12.56728 -11.86993 -11.66959 -11.04594 -10.89142 -10.36971 -10.30001 -9.31964 -8.54847 -8.39219 -6.47957 0.50746 0.70614 1.31740 1.33660 1.44383 2.26073 2.36544 2.95280 3.15674 3.76031 4.00691 4.33158 4.35365 4.40572 4.53676 4.57295 4.65186 4.84434 4.91212 4.96242 5.27640 5.38653 5.68859 5.85310 6.10204 6.21223 6.48434 6.58901 6.72718 6.83933 7.20853 7.33972 8.76728 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.032164 B = 0.010887 C = 0.009275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.319978 B = 2571.370461 C = 3018.244584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.729 5.729 3 C 0.387 3.613 4 C -0.258 4.258 5 C 0.031 3.969 6 C 0.215 3.785 7 H 0.050 0.950 8 N -0.839 5.839 9 C -0.545 4.545 10 H 0.030 0.970 11 C 0.023 3.977 12 N -0.938 5.938 13 Si 0.941 3.059 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.241 1.241 17 C -0.232 4.232 18 C 0.138 3.862 19 N -0.571 5.571 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.111 0.889 23 H 0.410 0.590 24 H 0.125 0.875 25 H 0.333 0.667 26 H 0.335 0.665 27 H 0.269 0.731 28 H 0.130 0.870 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -9.973 -7.853 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.363 5.363 3 C 0.152 3.848 4 C -0.284 4.284 5 C 0.023 3.977 6 C 0.104 3.896 7 H 0.068 0.932 8 N -0.367 5.367 9 C -0.584 4.584 10 H 0.048 0.952 11 C -0.177 4.177 12 N -0.576 5.576 13 Si 0.764 3.236 14 H -0.191 1.191 15 H -0.210 1.210 16 H -0.164 1.164 17 C -0.255 4.255 18 C -0.017 4.017 19 N -0.291 5.291 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.129 0.871 23 H 0.245 0.755 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.078 0.922 28 H 0.148 0.852 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.033 -11.203 -8.307 13.946 hybrid contribution -0.909 1.583 1.135 2.150 sum -0.876 -9.619 -7.172 12.031 Atomic orbital electron populations 1.21733 0.77795 1.04453 1.01085 1.44204 1.06464 1.04252 1.81394 1.18478 0.88523 0.86919 0.90884 1.21250 1.00776 0.91708 1.14618 1.20331 0.94519 0.94972 0.87898 1.18260 0.93564 0.87831 0.89910 0.93241 1.59518 1.06855 1.17095 1.53207 1.21714 1.03818 1.33684 0.99205 0.95153 1.25954 1.01497 0.94001 0.96259 1.70048 1.31986 1.34691 1.20897 0.85824 0.79081 0.78145 0.80549 1.19100 1.21016 1.16402 1.21702 0.94440 0.99693 1.09636 1.22727 1.00539 0.86334 0.92147 1.67168 1.06208 1.32436 1.23240 0.93702 0.92779 0.87056 0.75470 0.85666 0.85589 0.85295 0.92177 0.85167 0.80072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.98 9.92 127.77 1.27 3.25 15 2 N -0.73 -19.86 5.89 -366.54 -2.16 -22.02 15 3 C 0.39 13.93 7.65 133.06 1.02 14.95 15 4 C -0.26 -10.33 8.99 22.50 0.20 -10.13 15 5 C 0.03 1.35 4.96 -19.70 -0.10 1.25 15 6 C 0.21 9.90 2.66 43.42 0.12 10.01 15 7 H 0.05 2.29 5.20 -2.39 -0.01 2.28 15 8 N -0.84 -34.27 9.03 -174.96 -1.58 -35.85 15 9 C -0.54 -30.07 9.11 25.60 0.23 -29.83 15 10 H 0.03 1.90 8.06 -2.91 -0.02 1.88 15 11 C 0.02 1.27 5.47 84.66 0.46 1.74 15 12 N -0.94 -56.63 13.96 21.45 0.30 -56.33 15 13 Si 0.94 41.93 26.99 68.60 1.85 43.78 15 14 H -0.27 -11.48 7.11 99.48 0.71 -10.78 15 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 16 H -0.24 -9.88 6.82 99.48 0.68 -9.20 15 17 C -0.23 -8.97 9.38 22.37 0.21 -8.76 15 18 C 0.14 4.74 11.17 84.62 0.95 5.69 15 19 N -0.57 -20.61 10.39 -193.25 -2.01 -22.62 15 20 H 0.04 1.06 7.93 -2.39 -0.02 1.04 15 21 H 0.05 1.15 7.93 -2.39 -0.02 1.13 15 22 H 0.11 1.48 8.14 -2.39 -0.02 1.46 15 23 H 0.41 9.46 8.95 -92.70 -0.83 8.63 15 24 H 0.13 4.75 6.71 -2.91 -0.02 4.73 15 25 H 0.33 13.23 9.07 -89.69 -0.81 12.42 15 26 H 0.33 13.07 7.51 -89.69 -0.67 12.40 15 27 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 28 H 0.13 4.74 6.83 -2.91 -0.02 4.72 15 29 H 0.18 4.71 8.06 -2.91 -0.02 4.68 15 Total: -1.00 -66.48 249.30 -0.39 -66.86 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -1.15 Total: 38.01 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 4.36 Total: -11.83 kcal Atomic # 7 Polarization: -131.38 SS G_CDS: -5.45 Total: -136.82 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 1.85 Total: 43.78 kcal Total: -66.48 -0.39 -66.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238330521.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.371 kcal (2) G-P(sol) polarization free energy of solvation -66.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds