Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39003 * 120.00270 * 2 1 4 4 N 1.32433 * 119.70221 * 0.02562 * 3 2 1 5 5 C 1.31941 * 121.61758 * 180.02562 * 4 3 2 6 6 C 1.38063 * 120.86194 * 359.97438 * 5 4 3 7 7 C 1.38839 * 119.32593 * 359.72684 * 6 5 4 8 8 C 1.38345 * 118.50336 * 0.51488 * 7 6 5 9 9 C 1.50697 * 120.45260 * 179.78317 * 8 7 6 10 10 H 1.08997 * 109.47395 * 219.72543 * 9 8 7 11 11 N 1.46903 * 109.47212 * 339.72038 * 9 8 7 12 12 C 1.50700 * 109.47266 * 99.71958 * 9 8 7 13 13 H 1.07999 * 119.99988 * 0.02562 * 12 9 8 14 14 C 1.37885 * 120.00047 * 180.02562 * 12 9 8 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 9 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47088 * 89.99795 * 16 14 12 18 18 H 1.48495 * 109.47293 * 209.99997 * 16 14 12 19 19 H 1.48507 * 109.47015 * 329.99955 * 16 14 12 20 20 H 1.09000 * 109.47193 * 60.00113 * 1 2 3 21 21 H 1.08993 * 109.47111 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.46704 * 299.99599 * 1 2 3 23 23 H 0.97002 * 120.00148 * 180.02562 * 2 1 3 24 24 H 1.08006 * 119.56985 * 179.97438 * 5 4 3 25 25 H 1.07995 * 120.33760 * 179.97438 * 6 5 4 26 26 H 1.08001 * 120.75368 * 180.27869 * 7 6 5 27 27 H 1.00909 * 110.99700 * 59.99574 * 11 9 8 28 28 H 1.00892 * 111.00575 * 183.95228 * 11 9 8 29 29 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2038 0.0000 4 7 1.4920 2.3472 0.0005 5 6 2.1132 3.5113 0.0000 6 6 3.4922 3.5781 -0.0005 7 6 4.2300 2.4020 0.0052 8 6 3.5510 1.1967 0.0004 9 6 4.3080 -0.1064 0.0014 10 1 3.8098 -0.8165 -0.6586 11 7 5.6793 0.1235 -0.4726 12 6 4.3471 -0.6636 1.4011 13 1 3.8710 -0.1279 2.2090 14 6 4.9906 -1.8573 1.6502 15 7 5.5657 -2.5123 0.6653 16 14 5.0385 -2.5483 3.3850 17 1 3.8594 -3.4247 3.6014 18 1 6.2826 -3.3379 3.5692 19 1 5.0115 -1.4316 4.3635 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.9500 -0.8400 -0.0004 24 1 1.5354 4.4238 0.0001 25 1 3.9919 4.5355 -0.0013 26 1 5.3097 2.4274 0.0095 27 1 6.1626 0.7790 0.1232 28 1 6.1882 -0.7449 -0.5424 29 1 6.0188 -3.3519 0.8407 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238357529.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = 16.074550 kcal Electronic energy + Delta-G solvation = -13478.457056 eV Core-core repulsion = 11207.349700 eV Total energy + Delta-G solvation = -2271.107356 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.03071 -36.88664 -36.32498 -33.83843 -31.89846 -30.75230 -28.03904 -26.73690 -25.13893 -22.81962 -21.83947 -18.76372 -18.58408 -17.36344 -16.99551 -16.27382 -15.56706 -15.41143 -15.09349 -14.75514 -14.16865 -13.97821 -13.84920 -13.23731 -13.16058 -12.88014 -12.75269 -12.58283 -12.02147 -11.58223 -11.01237 -10.75211 -10.21238 -10.16510 -9.22838 -8.39160 -8.05141 -6.37607 0.64343 0.76456 1.35050 1.38843 1.47444 2.35717 2.59625 3.04458 3.24067 3.88334 4.23251 4.29133 4.50104 4.56196 4.71439 4.76123 4.78065 4.97892 4.99558 5.27180 5.54057 5.63558 5.76989 5.91781 6.08435 6.51845 6.61842 6.64518 6.93488 7.10805 7.38628 7.47974 8.81207 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.032200 B = 0.011491 C = 0.009904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.365692 B = 2436.184666 C = 2826.518331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.733 5.733 3 C 0.379 3.621 4 N -0.563 5.563 5 C 0.112 3.888 6 C -0.233 4.233 7 C -0.048 4.048 8 C -0.177 4.177 9 C 0.261 3.739 10 H 0.015 0.985 11 N -0.842 5.842 12 C -0.548 4.548 13 H 0.037 0.963 14 C 0.029 3.971 15 N -0.912 5.912 16 Si 0.953 3.047 17 H -0.276 1.276 18 H -0.280 1.280 19 H -0.279 1.279 20 H 0.050 0.950 21 H 0.088 0.912 22 H 0.044 0.956 23 H 0.410 0.590 24 H 0.182 0.818 25 H 0.156 0.844 26 H 0.133 0.867 27 H 0.318 0.682 28 H 0.346 0.654 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 6.697 -0.266 8.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.367 5.367 3 C 0.143 3.857 4 N -0.282 5.282 5 C -0.044 4.044 6 C -0.256 4.256 7 C -0.074 4.074 8 C -0.184 4.184 9 C 0.150 3.850 10 H 0.033 0.967 11 N -0.371 5.371 12 C -0.588 4.588 13 H 0.055 0.945 14 C -0.172 4.172 15 N -0.551 5.551 16 Si 0.779 3.221 17 H -0.202 1.202 18 H -0.206 1.206 19 H -0.204 1.204 20 H 0.068 0.932 21 H 0.106 0.894 22 H 0.063 0.937 23 H 0.247 0.753 24 H 0.199 0.801 25 H 0.174 0.826 26 H 0.151 0.849 27 H 0.129 0.871 28 H 0.160 0.840 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.417 6.784 -0.993 9.391 hybrid contribution 1.531 -1.403 1.813 2.757 sum -4.886 5.381 0.821 7.314 Atomic orbital electron populations 1.21424 0.78847 1.02374 1.00903 1.44500 1.06860 1.04645 1.80690 1.18380 0.87992 0.87109 0.92240 1.67168 1.40932 0.97849 1.22213 1.22813 0.92702 0.94716 0.94163 1.22036 0.95329 0.99190 1.08999 1.21330 1.00681 0.91369 0.94013 1.20699 0.92891 0.97976 1.06853 1.17454 0.87346 0.87915 0.92239 0.96746 1.59479 1.05082 1.17550 1.55026 1.21879 1.35438 1.06400 0.95063 0.94467 1.25626 0.94706 0.96513 1.00337 1.69829 1.36295 1.16580 1.32402 0.85639 0.77647 0.78136 0.80643 1.20178 1.20586 1.20381 0.93158 0.89355 0.93696 0.75295 0.80098 0.82635 0.84930 0.87141 0.83971 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.32 10.72 127.77 1.37 4.69 15 2 N -0.73 -28.88 5.78 -366.56 -2.12 -31.00 15 3 C 0.38 16.15 7.46 133.04 0.99 17.15 15 4 N -0.56 -21.72 9.57 -193.26 -1.85 -23.57 15 5 C 0.11 3.61 11.17 84.63 0.95 4.55 15 6 C -0.23 -7.43 10.10 22.37 0.23 -7.20 15 7 C -0.05 -1.86 9.35 22.44 0.21 -1.65 15 8 C -0.18 -7.92 5.05 -19.63 -0.10 -8.02 15 9 C 0.26 12.94 2.32 43.42 0.10 13.04 15 10 H 0.01 0.80 7.10 -2.39 -0.02 0.78 15 11 N -0.84 -39.74 8.69 -174.95 -1.52 -41.26 15 12 C -0.55 -28.90 8.48 25.60 0.22 -28.68 15 13 H 0.04 2.06 7.74 -2.91 -0.02 2.03 15 14 C 0.03 1.51 5.38 84.66 0.46 1.96 15 15 N -0.91 -48.79 11.55 21.45 0.25 -48.54 15 16 Si 0.95 42.23 29.54 68.60 2.03 44.26 15 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 18 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 15 21 H 0.09 2.17 8.14 -2.39 -0.02 2.15 15 22 H 0.04 1.38 8.14 -2.39 -0.02 1.36 15 23 H 0.41 17.22 6.85 -92.71 -0.64 16.58 15 24 H 0.18 4.21 8.06 -2.91 -0.02 4.19 15 25 H 0.16 3.71 8.06 -2.91 -0.02 3.69 15 26 H 0.13 4.89 6.37 -2.91 -0.02 4.87 15 27 H 0.32 14.15 7.33 -89.69 -0.66 13.49 15 28 H 0.35 17.47 7.09 -89.70 -0.64 16.84 15 29 H 0.27 13.70 8.31 -92.71 -0.77 12.93 15 Total: -1.00 -58.85 247.82 0.46 -58.39 By element: Atomic # 1 Polarization: 46.62 SS G_CDS: -0.74 Total: 45.88 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 4.42 Total: -4.16 kcal Atomic # 7 Polarization: -139.13 SS G_CDS: -5.24 Total: -144.37 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -58.85 0.46 -58.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238357529.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.463 kcal (2) G-P(sol) polarization free energy of solvation -58.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds