Wall clock time and date at job start Mon Mar 30 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.31205 * 121.78169 * 2 1 4 4 S 1.75826 * 109.78974 * 179.85131 * 3 2 1 5 5 C 1.75909 * 90.63884 * 0.34810 * 4 3 2 6 6 C 1.40835 * 143.44783 * 179.79702 * 5 4 3 7 7 C 1.40747 * 126.61877 * 0.02562 * 6 5 4 8 8 H 1.08003 * 119.99865 * 359.97438 * 7 6 5 9 9 C 1.39341 * 120.00098 * 179.97438 * 7 6 5 10 10 N 1.31366 * 119.99800 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 120.00095 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47197 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46895 * 120.00208 * 11 9 7 14 14 H 1.48504 * 109.47064 * 240.00139 * 11 9 7 15 15 N 1.35706 * 106.76110 * 179.97438 * 6 5 4 16 16 C 1.29962 * 109.38576 * 359.97438 * 15 6 5 17 17 N 1.35535 * 109.51327 * 359.79471 * 5 4 3 18 18 H 1.09002 * 109.47152 * 269.71695 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.71795 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.71776 * 1 2 3 21 21 H 1.08003 * 125.10814 * 359.97438 * 3 2 1 22 22 H 0.96996 * 120.00037 * 179.97438 * 10 9 7 23 23 H 1.08004 * 125.01231 * 180.02562 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1153 0.0000 4 16 3.9179 0.7500 0.0043 5 6 3.5717 -0.9746 -0.0048 6 6 4.1713 -2.2489 -0.0115 7 6 5.5509 -2.5276 -0.0125 8 1 6.2654 -1.7177 -0.0082 9 6 5.9950 -3.8483 -0.0190 10 7 5.1259 -4.8334 -0.0237 11 14 7.8260 -4.2182 -0.0210 12 1 8.5883 -2.9438 -0.0155 13 1 8.1726 -5.0083 1.1876 14 1 8.1724 -4.9964 -1.2374 15 7 3.1622 -3.1563 -0.0157 16 6 2.0218 -2.5331 -0.0115 17 7 2.2301 -1.1670 -0.0058 18 1 -0.3633 -0.0051 1.0277 19 1 -0.3633 -0.8875 -0.5182 20 1 -0.3633 0.8925 -0.5095 21 1 1.7742 2.1087 -0.0004 22 1 5.4349 -5.7528 -0.0286 23 1 1.0538 -3.0123 -0.0131 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238554291.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:23 Heat of formation + Delta-G solvation = 84.064040 kcal Electronic energy + Delta-G solvation = -11126.998187 eV Core-core repulsion = 9068.040191 eV Total energy + Delta-G solvation = -2058.957996 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76213 -35.96899 -33.14072 -30.12649 -28.88565 -27.37169 -24.82700 -21.64379 -20.19049 -19.03385 -17.35017 -16.02121 -14.90622 -14.73044 -14.07059 -13.74394 -13.04190 -12.83862 -12.63827 -12.32584 -11.83754 -11.22249 -11.05308 -10.52995 -10.46682 -10.08897 -10.03946 -9.35574 -8.51624 -8.46110 -7.92807 -6.42235 -6.41625 -4.05085 2.01446 2.59261 3.06419 3.13015 3.19909 3.25870 3.52510 3.92607 4.11645 4.44932 5.18971 5.43850 5.59380 5.63402 5.67769 5.87906 6.09097 6.33873 6.76670 7.27131 7.42072 7.49509 8.26120 8.52342 8.83490 9.09515 9.65783 10.52019 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.053856 B = 0.010569 C = 0.008878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.781206 B = 2648.618656 C = 3153.254323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.096 3.904 3 C -0.254 4.254 4 S 0.053 5.947 5 C -0.255 4.255 6 C 0.246 3.754 7 C -0.434 4.434 8 H 0.081 0.919 9 C 0.072 3.928 10 N -0.765 5.765 11 Si 0.910 3.090 12 H -0.262 1.262 13 H -0.275 1.275 14 H -0.275 1.275 15 N -0.425 5.425 16 C 0.165 3.835 17 N -0.421 5.421 18 H 0.073 0.927 19 H 0.068 0.932 20 H 0.077 0.923 21 H 0.164 0.836 22 H 0.271 0.729 23 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.753 6.594 0.037 8.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.017 4.017 3 C -0.394 4.394 4 S 0.307 5.693 5 C -0.471 4.471 6 C 0.118 3.882 7 C -0.468 4.468 8 H 0.099 0.901 9 C -0.148 4.148 10 N -0.391 5.391 11 Si 0.735 3.265 12 H -0.186 1.186 13 H -0.201 1.201 14 H -0.201 1.201 15 N -0.144 5.144 16 C -0.117 4.117 17 N -0.107 5.107 18 H 0.092 0.908 19 H 0.087 0.913 20 H 0.096 0.904 21 H 0.182 0.818 22 H 0.081 0.919 23 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.527 6.268 0.036 7.732 hybrid contribution -0.687 -0.173 0.002 0.708 sum -5.214 6.095 0.038 8.021 Atomic orbital electron populations 1.20553 0.88594 1.03249 1.02753 1.18875 0.94498 0.85057 1.03290 1.24384 0.97789 1.00261 1.16935 1.83477 1.02431 0.96871 1.86472 1.23776 0.86021 0.97637 1.39653 1.17886 0.92761 0.82125 0.95456 1.18449 0.89284 0.92715 1.46397 0.90127 1.25842 0.99551 0.96093 0.93337 1.70233 1.34624 0.99657 1.34545 0.86230 0.82773 0.79213 0.78275 1.18610 1.20073 1.20077 1.71112 0.96167 1.29386 1.17761 1.25314 0.99905 0.76412 1.10059 1.43407 1.06008 1.05349 1.55968 0.90796 0.91316 0.90411 0.81838 0.91877 0.80003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.20 36.01 0.37 -0.82 14 2 C 0.10 1.79 6.75 -81.92 -0.55 1.24 14 3 C -0.25 -4.56 10.81 28.96 0.31 -4.25 14 4 S 0.05 1.15 23.36 -107.50 -2.51 -1.36 14 5 C -0.26 -6.66 7.92 -14.93 -0.12 -6.78 14 6 C 0.25 7.13 6.72 -84.22 -0.57 6.56 14 7 C -0.43 -12.48 9.35 -38.22 -0.36 -12.84 14 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 14 9 C 0.07 1.95 5.49 -17.34 -0.10 1.85 14 10 N -0.77 -21.58 11.95 55.52 0.66 -20.91 14 11 Si 0.91 19.98 29.56 -169.99 -5.02 14.96 14 12 H -0.26 -5.66 7.11 56.52 0.40 -5.26 14 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 14 14 H -0.28 -5.91 7.11 56.52 0.40 -5.51 14 15 N -0.43 -11.95 9.47 -11.23 -0.11 -12.06 14 16 C 0.17 3.89 12.93 -87.87 -1.14 2.75 14 17 N -0.42 -9.72 3.16 -58.54 -0.19 -9.91 14 18 H 0.07 0.86 8.14 -51.93 -0.42 0.44 14 19 H 0.07 0.86 8.14 -51.93 -0.42 0.43 14 20 H 0.08 0.81 8.10 -51.93 -0.42 0.39 14 21 H 0.16 2.26 8.06 -52.48 -0.42 1.83 14 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 14 23 H 0.18 3.39 8.06 -52.48 -0.42 2.97 14 LS Contribution 225.63 15.07 3.40 3.40 Total: -1.00 -32.40 225.63 -7.57 -39.97 By element: Atomic # 1 Polarization: -0.14 SS G_CDS: -1.66 Total: -1.80 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -2.15 Total: -12.28 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: 0.37 Total: -42.88 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.51 Total: -1.36 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -32.40 -7.57 -39.97 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238554291.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.031 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds