Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.35946 * 123.45101 * 272.59841 * 3 2 1 5 5 S 1.70445 * 110.82785 * 179.72901 * 4 3 2 6 6 C 1.75506 * 92.44237 * 0.35377 * 5 4 3 7 7 C 1.50701 * 124.72035 * 179.90457 * 6 5 4 8 8 H 1.09002 * 109.47060 * 159.69988 * 7 6 5 9 9 N 1.46901 * 109.46921 * 39.69807 * 7 6 5 10 10 C 1.50699 * 109.47269 * 279.69842 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47256 * 90.00491 * 14 12 10 16 16 H 1.48506 * 109.46930 * 210.00332 * 14 12 10 17 17 H 1.48499 * 109.47104 * 330.00193 * 14 12 10 18 18 C 1.32823 * 110.55706 * 359.64317 * 6 5 4 19 19 H 1.08000 * 124.58539 * 0.02562 * 4 3 2 20 20 H 1.00901 * 110.99547 * 176.04411 * 9 7 6 21 21 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 22 22 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 23 23 H 1.08002 * 123.46358 * 180.24779 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3175 -0.0504 1.1331 5 16 4.9807 -0.0403 0.7607 6 6 4.6705 0.0454 -0.9646 7 6 5.7379 0.0941 -2.0273 8 1 5.3138 -0.2146 -2.9828 9 7 6.8341 -0.8131 -1.6621 10 6 6.2672 1.5003 -2.1435 11 1 5.8706 2.2806 -1.5109 12 6 7.2585 1.7905 -3.0569 13 7 7.7418 0.8402 -3.8269 14 14 7.9151 3.5334 -3.2004 15 1 9.0621 3.7082 -2.2737 16 1 8.3630 3.7803 -4.5946 17 1 6.8420 4.4972 -2.8473 18 6 3.3640 0.0556 -1.2036 19 1 2.9135 -0.0964 2.1337 20 1 7.5326 -0.8473 -2.3895 21 1 7.2442 -0.5477 -0.7793 22 1 8.4390 1.0444 -4.4697 23 1 2.9405 0.1007 -2.1961 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238587016.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = 48.052952 kcal Electronic energy + Delta-G solvation = -10719.835520 eV Core-core repulsion = 8659.315965 eV Total energy + Delta-G solvation = -2060.519554 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.80779 -35.89150 -34.52314 -31.55832 -28.96962 -25.99223 -24.62641 -22.26028 -19.51542 -17.34039 -16.60436 -16.34827 -15.03836 -14.40040 -13.77710 -13.23202 -13.13100 -13.01596 -12.65975 -12.12932 -11.93054 -11.55341 -11.29573 -11.01942 -10.95071 -10.40052 -10.13541 -9.92422 -8.81702 -8.27120 -7.91199 -7.38469 -6.23713 -4.40877 1.19852 2.02852 2.46099 2.56501 2.98704 3.15743 3.24133 3.28104 3.81025 4.23029 4.42930 5.00459 5.18189 5.79724 5.88825 6.38465 6.40557 6.68977 6.76239 7.38224 7.61368 7.75463 7.87921 8.46970 8.74143 8.91129 9.31602 10.74781 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.042933 B = 0.008907 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.019681 B = 3142.927334 C = 3320.938839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.289 3.711 3 C -0.053 4.053 4 C -0.232 4.232 5 S 0.211 5.789 6 C -0.106 4.106 7 C 0.266 3.734 8 H 0.062 0.938 9 N -0.849 5.849 10 C -0.550 4.550 11 H 0.060 0.940 12 C 0.069 3.931 13 N -0.891 5.891 14 Si 0.900 3.100 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.143 4.143 19 H 0.164 0.836 20 H 0.361 0.639 21 H 0.311 0.689 22 H 0.268 0.732 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 -1.137 6.934 7.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.027 4.027 3 C -0.074 4.074 4 C -0.374 4.374 5 S 0.478 5.522 6 C -0.225 4.225 7 C 0.154 3.846 8 H 0.079 0.921 9 N -0.380 5.380 10 C -0.590 4.590 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.530 5.530 14 Si 0.727 3.273 15 H -0.204 1.204 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.171 4.171 19 H 0.181 0.819 20 H 0.178 0.822 21 H 0.120 0.880 22 H 0.078 0.922 23 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.517 -1.811 7.623 8.229 hybrid contribution -0.019 1.960 -1.067 2.231 sum -2.536 0.149 6.556 7.031 Atomic orbital electron populations 1.81179 1.12032 1.10765 1.08316 1.25256 0.92046 0.92577 0.92811 1.16279 0.84951 1.12264 0.93868 1.25390 1.00648 1.09563 1.01755 1.82996 0.99980 1.67741 1.01475 1.25196 0.98518 1.01099 0.97658 1.17686 0.86004 0.91368 0.89517 0.92072 1.59559 1.16627 1.53971 1.07795 1.21804 1.20784 0.95034 1.21412 0.92156 1.25011 0.96141 0.97769 0.94534 1.69723 1.28033 1.32504 1.22720 0.86461 0.79219 0.84142 0.77473 1.20442 1.20997 1.19704 1.20794 0.91677 1.07305 0.97348 0.81874 0.82151 0.87985 0.92191 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.89 18.54 41.84 0.78 -7.11 14 2 C 0.29 4.76 15.62 -22.47 -0.35 4.41 14 3 C -0.05 -0.86 5.84 -106.37 -0.62 -1.48 14 4 C -0.23 -3.31 10.78 29.91 0.32 -2.99 14 5 S 0.21 3.28 22.15 -107.50 -2.38 0.90 14 6 C -0.11 -2.05 5.34 -36.17 -0.19 -2.24 14 7 C 0.27 6.04 3.13 -70.02 -0.22 5.82 14 8 H 0.06 1.53 8.11 -51.93 -0.42 1.11 14 9 N -0.85 -18.42 9.10 -6.65 -0.06 -18.49 14 10 C -0.55 -13.64 8.71 -34.44 -0.30 -13.94 14 11 H 0.06 1.51 7.74 -52.49 -0.41 1.10 14 12 C 0.07 1.73 5.38 -17.82 -0.10 1.64 14 13 N -0.89 -23.04 11.54 55.43 0.64 -22.40 14 14 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 14 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 14 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 14 17 H -0.27 -6.04 7.11 56.52 0.40 -5.63 14 18 C -0.14 -2.56 10.18 -39.02 -0.40 -2.96 14 19 H 0.16 1.84 8.06 -52.49 -0.42 1.42 14 20 H 0.36 8.48 7.08 -39.29 -0.28 8.20 14 21 H 0.31 6.35 8.27 -39.29 -0.33 6.03 14 22 H 0.27 6.65 8.31 -40.82 -0.34 6.32 14 23 H 0.15 2.50 8.06 -52.49 -0.42 2.08 14 LS Contribution 232.79 15.07 3.51 3.51 Total: -1.00 -25.67 232.79 -5.81 -31.47 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -1.41 Total: 9.05 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.85 Total: -11.75 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 1.35 Total: -48.00 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -2.38 Total: 0.90 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -25.67 -5.81 -31.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587016.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.525 kcal (2) G-P(sol) polarization free energy of solvation -25.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds