Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.35946 * 123.45101 * 272.59841 * 3 2 1 5 5 S 1.70445 * 110.82785 * 179.72901 * 4 3 2 6 6 C 1.75506 * 92.44237 * 0.35377 * 5 4 3 7 7 C 1.50701 * 124.72035 * 179.90457 * 6 5 4 8 8 H 1.09002 * 109.47060 * 159.69988 * 7 6 5 9 9 N 1.46901 * 109.46921 * 39.69807 * 7 6 5 10 10 C 1.50699 * 109.47269 * 279.69842 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47256 * 90.00491 * 14 12 10 16 16 H 1.48506 * 109.46930 * 210.00332 * 14 12 10 17 17 H 1.48499 * 109.47104 * 330.00193 * 14 12 10 18 18 C 1.32823 * 110.55706 * 359.64317 * 6 5 4 19 19 H 1.08000 * 124.58539 * 0.02562 * 4 3 2 20 20 H 1.00901 * 110.99547 * 176.04411 * 9 7 6 21 21 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 22 22 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 23 23 H 1.08002 * 123.46358 * 180.24779 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3175 -0.0504 1.1331 5 16 4.9807 -0.0403 0.7607 6 6 4.6705 0.0454 -0.9646 7 6 5.7379 0.0941 -2.0273 8 1 5.3138 -0.2146 -2.9828 9 7 6.8341 -0.8131 -1.6621 10 6 6.2672 1.5003 -2.1435 11 1 5.8706 2.2806 -1.5109 12 6 7.2585 1.7905 -3.0569 13 7 7.7418 0.8402 -3.8269 14 14 7.9151 3.5334 -3.2004 15 1 9.0621 3.7082 -2.2737 16 1 8.3630 3.7803 -4.5946 17 1 6.8420 4.4972 -2.8473 18 6 3.3640 0.0556 -1.2036 19 1 2.9135 -0.0964 2.1337 20 1 7.5326 -0.8473 -2.3895 21 1 7.2442 -0.5477 -0.7793 22 1 8.4390 1.0444 -4.4697 23 1 2.9405 0.1007 -2.1961 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238587016.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = 32.059545 kcal Electronic energy + Delta-G solvation = -10720.529046 eV Core-core repulsion = 8659.315965 eV Total energy + Delta-G solvation = -2061.213080 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.16566 -37.36023 -36.14590 -33.37703 -30.44172 -27.81922 -25.95929 -23.93123 -20.97659 -18.85999 -18.30007 -17.69414 -16.74684 -16.13628 -15.16014 -14.75340 -14.61139 -14.42702 -14.23316 -13.61355 -13.37496 -13.04792 -12.90392 -12.76825 -12.64036 -11.96806 -11.87677 -11.53575 -10.70853 -9.69274 -9.18716 -9.17349 -8.12117 -6.37091 -0.05226 0.74180 1.13194 1.14601 1.41144 1.45129 1.53439 1.67896 2.39297 2.51475 3.06921 3.14099 3.98075 4.35360 4.59039 4.73898 5.00034 5.16321 5.33413 5.64651 5.66712 6.02806 6.46911 6.62967 6.88387 7.09662 7.39007 8.82978 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.042933 B = 0.008907 C = 0.008429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.019681 B = 3142.927334 C = 3320.938839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.306 3.694 3 C -0.070 4.070 4 C -0.201 4.201 5 S 0.258 5.742 6 C -0.154 4.154 7 C 0.270 3.730 8 H 0.025 0.975 9 N -0.841 5.841 10 C -0.560 4.560 11 H 0.055 0.945 12 C 0.026 3.974 13 N -0.914 5.914 14 Si 0.956 3.044 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.137 4.137 19 H 0.204 0.796 20 H 0.351 0.649 21 H 0.319 0.681 22 H 0.268 0.732 23 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.749 -0.714 8.745 8.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.010 4.010 3 C -0.090 4.090 4 C -0.342 4.342 5 S 0.525 5.475 6 C -0.272 4.272 7 C 0.158 3.842 8 H 0.043 0.957 9 N -0.371 5.371 10 C -0.600 4.600 11 H 0.073 0.927 12 C -0.175 4.175 13 N -0.553 5.553 14 Si 0.782 3.218 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.166 4.166 19 H 0.221 0.779 20 H 0.166 0.834 21 H 0.129 0.871 22 H 0.078 0.922 23 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.608 -1.390 9.447 9.898 hybrid contribution -0.001 1.793 -1.575 2.387 sum -2.609 0.404 7.871 8.302 Atomic orbital electron populations 1.81203 1.12641 1.11909 1.08974 1.25168 0.91851 0.91773 0.92161 1.16088 0.84660 1.14568 0.93688 1.25859 0.99847 1.05488 1.02974 1.82803 1.00339 1.66603 0.97736 1.24846 0.98020 1.04565 0.99751 1.17380 0.86900 0.90325 0.89591 0.95730 1.59511 1.16128 1.53688 1.07724 1.22057 1.20716 0.96034 1.21175 0.92677 1.25685 0.96567 1.00816 0.94448 1.69819 1.28452 1.33892 1.23178 0.85585 0.78608 0.80343 0.77277 1.19716 1.21130 1.19835 1.20876 0.91668 1.05926 0.98127 0.77929 0.83411 0.87098 0.92221 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.89 18.54 19.01 0.35 -15.54 14 2 C 0.31 9.48 15.62 88.33 1.38 10.86 14 3 C -0.07 -2.10 5.84 -21.00 -0.12 -2.22 14 4 C -0.20 -4.94 10.78 67.29 0.73 -4.21 14 5 S 0.26 7.32 22.15 -56.49 -1.25 6.07 14 6 C -0.15 -5.83 5.34 24.51 0.13 -5.70 14 7 C 0.27 12.43 3.13 43.42 0.14 12.56 14 8 H 0.02 1.29 8.11 -2.39 -0.02 1.27 14 9 N -0.84 -36.65 9.10 -174.95 -1.59 -38.24 14 10 C -0.56 -27.88 8.71 25.60 0.22 -27.65 14 11 H 0.05 2.74 7.74 -2.91 -0.02 2.72 14 12 C 0.03 1.30 5.38 84.65 0.46 1.75 14 13 N -0.91 -47.80 11.54 21.45 0.25 -47.55 14 14 Si 0.96 40.50 29.54 68.60 2.03 42.53 14 15 H -0.27 -11.14 7.11 99.48 0.71 -10.44 14 16 H -0.29 -12.07 7.11 99.48 0.71 -11.36 14 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 14 18 C -0.14 -4.81 10.18 22.66 0.23 -4.58 14 19 H 0.20 3.41 8.06 -2.91 -0.02 3.39 14 20 H 0.35 16.69 7.08 -89.69 -0.63 16.05 14 21 H 0.32 12.83 8.27 -89.70 -0.74 12.09 14 22 H 0.27 13.43 8.31 -92.71 -0.77 12.66 14 23 H 0.14 4.90 8.06 -2.91 -0.02 4.88 14 Total: -1.00 -54.33 232.79 2.83 -51.50 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -0.12 Total: 20.42 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 3.16 Total: -19.20 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -0.99 Total: -101.33 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -1.25 Total: 6.07 kcal Total: -54.33 2.83 -51.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587016.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.564 kcal (2) G-P(sol) polarization free energy of solvation -54.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds