Wall clock time and date at job start Mon Mar 30 2020 02:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36624 * 125.46371 * 348.65445 * 3 2 1 5 5 C 1.37599 * 113.27225 * 179.75839 * 4 3 2 6 6 C 1.33709 * 115.09798 * 0.44936 * 5 4 3 7 7 C 1.50700 * 124.51554 * 179.82376 * 6 5 4 8 8 H 1.09004 * 109.47210 * 339.72753 * 7 6 5 9 9 N 1.46899 * 109.47483 * 219.72423 * 7 6 5 10 10 C 1.50702 * 109.46869 * 99.72460 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 S 1.70614 * 110.97449 * 359.56534 * 6 5 4 19 19 H 1.08005 * 123.36041 * 359.97438 * 4 3 2 20 20 H 1.08010 * 122.45505 * 180.25184 * 5 4 3 21 21 H 1.00903 * 111.00048 * 300.00270 * 9 7 6 22 22 H 1.00904 * 110.99882 * 63.95460 * 9 7 6 23 23 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3611 -1.0900 0.2189 5 6 4.7059 -0.8056 0.1565 6 6 5.0041 0.4734 -0.0947 7 6 6.4049 1.0181 -0.2043 8 1 7.0988 0.3383 0.2904 9 7 6.4693 2.3371 0.4391 10 6 6.7805 1.1493 -1.6578 11 1 6.0752 0.8670 -2.4255 12 6 8.0224 1.6357 -2.0078 13 7 8.8810 1.9798 -1.0730 14 14 8.4850 1.8055 -3.8095 15 1 8.0951 3.1534 -4.2958 16 1 9.9516 1.6293 -3.9627 17 1 7.7765 0.7691 -4.6025 18 16 3.5872 1.4054 -0.2817 19 1 2.9714 -2.0776 0.4174 20 1 5.4653 -1.5596 0.3031 21 1 5.8345 2.9858 -0.0018 22 1 6.2844 2.2662 1.4285 23 1 9.7548 2.3217 -1.3192 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238591061.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:56 Heat of formation + Delta-G solvation = 58.107039 kcal Electronic energy + Delta-G solvation = -10705.519210 eV Core-core repulsion = 8645.435633 eV Total energy + Delta-G solvation = -2060.083576 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.93501 -36.29514 -34.50126 -31.67321 -29.10990 -26.25729 -24.45919 -21.41266 -20.40453 -17.77913 -16.67364 -15.79510 -14.82114 -14.28406 -14.15916 -13.89601 -13.20741 -12.85508 -12.63274 -12.42918 -12.00216 -11.77709 -11.26413 -10.91299 -10.79043 -10.44292 -10.05057 -9.43230 -8.57509 -8.24527 -8.09344 -7.38744 -6.03098 -4.19959 0.89822 1.58112 2.37473 2.83368 3.12573 3.27074 3.34475 3.37506 3.55363 4.21983 4.37565 5.21680 5.45193 5.73886 5.90451 6.04579 6.34195 6.65247 6.72169 7.17743 7.62220 7.74656 7.93913 8.38261 8.75624 8.93589 9.49991 11.00911 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.052092 B = 0.008617 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.385813 B = 3248.639923 C = 3383.971945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.299 3.701 3 C -0.222 4.222 4 C -0.042 4.042 5 C -0.185 4.185 6 C -0.152 4.152 7 C 0.278 3.722 8 H 0.064 0.936 9 N -0.809 5.809 10 C -0.538 4.538 11 H 0.058 0.942 12 C 0.086 3.914 13 N -0.843 5.843 14 Si 0.889 3.111 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 S 0.228 5.772 19 H 0.142 0.858 20 H 0.144 0.856 21 H 0.318 0.682 22 H 0.304 0.696 23 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.826 -2.548 2.540 6.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.016 4.016 3 C -0.342 4.342 4 C -0.080 4.080 5 C -0.213 4.213 6 C -0.276 4.276 7 C 0.166 3.834 8 H 0.081 0.919 9 N -0.335 5.335 10 C -0.577 4.577 11 H 0.076 0.924 12 C -0.122 4.122 13 N -0.477 5.477 14 Si 0.716 3.284 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.199 1.199 18 S 0.495 5.505 19 H 0.160 0.840 20 H 0.162 0.838 21 H 0.131 0.869 22 H 0.115 0.885 23 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.866 -0.908 2.057 7.225 hybrid contribution 0.077 -1.689 -0.510 1.766 sum -6.789 -2.597 1.547 7.432 Atomic orbital electron populations 1.81221 1.11402 1.07735 1.11441 1.24449 0.91094 0.93513 0.92514 1.20287 0.88755 1.00981 1.24164 1.20663 0.92641 0.97759 0.96902 1.19876 0.95484 0.96977 1.09011 1.26748 1.04333 0.98396 0.98074 1.18070 0.81537 0.87278 0.96512 0.91866 1.59134 1.59562 1.10842 1.03942 1.20817 1.00461 1.47116 0.89312 0.92387 1.24937 0.96136 0.94197 0.96928 1.70089 1.06201 1.39564 1.31814 0.86674 0.77667 0.78603 0.85470 1.20535 1.21141 1.19859 1.83022 0.93720 1.08242 1.65499 0.84041 0.83843 0.86899 0.88530 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.46 18.54 41.83 0.78 -6.68 14 2 C 0.30 4.71 15.83 -22.47 -0.36 4.35 14 3 C -0.22 -3.38 6.32 -38.24 -0.24 -3.62 14 4 C -0.04 -0.60 10.24 -40.40 -0.41 -1.01 14 5 C -0.19 -2.99 9.98 -41.40 -0.41 -3.41 14 6 C -0.15 -2.77 5.18 -35.90 -0.19 -2.96 14 7 C 0.28 6.15 3.02 -70.02 -0.21 5.93 14 8 H 0.06 1.53 8.11 -51.93 -0.42 1.11 14 9 N -0.81 -17.10 8.42 -6.65 -0.06 -17.16 14 10 C -0.54 -13.54 8.71 -34.44 -0.30 -13.84 14 11 H 0.06 1.47 7.74 -52.49 -0.41 1.06 14 12 C 0.09 2.24 5.39 -17.82 -0.10 2.15 14 13 N -0.84 -22.97 12.76 55.43 0.71 -22.26 14 14 Si 0.89 20.20 29.54 -169.99 -5.02 15.17 14 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 14 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 14 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 14 18 S 0.23 3.65 22.10 -107.50 -2.38 1.28 14 19 H 0.14 1.62 8.06 -52.48 -0.42 1.20 14 20 H 0.14 2.17 8.06 -52.48 -0.42 1.74 14 21 H 0.32 6.43 8.23 -39.29 -0.32 6.10 14 22 H 0.30 5.64 9.06 -39.29 -0.36 5.28 14 23 H 0.26 6.78 8.31 -40.82 -0.34 6.44 14 LS Contribution 234.92 15.07 3.54 3.54 Total: -1.00 -27.26 234.92 -6.13 -33.39 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -1.49 Total: 5.12 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.22 Total: -12.40 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 1.43 Total: -46.10 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -2.38 Total: 1.28 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.26 -6.13 -33.39 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591061.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.499 kcal (2) G-P(sol) polarization free energy of solvation -27.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds