Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.36624 * 125.46371 * 348.65445 * 3 2 1 5 5 C 1.37599 * 113.27225 * 179.75839 * 4 3 2 6 6 C 1.33709 * 115.09798 * 0.44936 * 5 4 3 7 7 C 1.50700 * 124.51554 * 179.82376 * 6 5 4 8 8 H 1.09004 * 109.47210 * 339.72753 * 7 6 5 9 9 N 1.46899 * 109.47483 * 219.72423 * 7 6 5 10 10 C 1.50702 * 109.46869 * 99.72460 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99698 * 0.28408 * 12 10 7 14 14 Si 1.86794 * 119.99837 * 180.27476 * 12 10 7 15 15 H 1.48501 * 109.47188 * 90.00793 * 14 12 10 16 16 H 1.48501 * 109.47085 * 210.00372 * 14 12 10 17 17 H 1.48498 * 109.47634 * 330.00608 * 14 12 10 18 18 S 1.70614 * 110.97449 * 359.56534 * 6 5 4 19 19 H 1.08005 * 123.36041 * 359.97438 * 4 3 2 20 20 H 1.08010 * 122.45505 * 180.25184 * 5 4 3 21 21 H 1.00903 * 111.00048 * 300.00270 * 9 7 6 22 22 H 1.00904 * 110.99882 * 63.95460 * 9 7 6 23 23 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3611 -1.0900 0.2189 5 6 4.7059 -0.8056 0.1565 6 6 5.0041 0.4734 -0.0947 7 6 6.4049 1.0181 -0.2043 8 1 7.0988 0.3383 0.2904 9 7 6.4693 2.3371 0.4391 10 6 6.7805 1.1493 -1.6578 11 1 6.0752 0.8670 -2.4255 12 6 8.0224 1.6357 -2.0078 13 7 8.8810 1.9798 -1.0730 14 14 8.4850 1.8055 -3.8095 15 1 8.0951 3.1534 -4.2958 16 1 9.9516 1.6293 -3.9627 17 1 7.7765 0.7691 -4.6025 18 16 3.5872 1.4054 -0.2817 19 1 2.9714 -2.0776 0.4174 20 1 5.4653 -1.5596 0.3031 21 1 5.8345 2.9858 -0.0018 22 1 6.2844 2.2662 1.4285 23 1 9.7548 2.3217 -1.3192 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238591061.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = 40.768306 kcal Electronic energy + Delta-G solvation = -10706.271074 eV Core-core repulsion = 8645.435633 eV Total energy + Delta-G solvation = -2060.835440 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.24876 -37.64669 -36.13731 -33.54086 -30.50878 -28.03807 -25.93546 -23.03900 -21.68404 -19.13574 -18.54636 -17.14448 -16.57912 -15.94920 -15.61478 -15.18610 -14.56401 -14.45983 -14.09437 -13.84729 -13.39358 -13.31770 -12.82621 -12.65754 -12.52087 -11.94066 -11.69743 -11.25467 -10.54445 -9.56357 -9.43273 -8.99702 -7.98864 -6.20184 -0.38080 0.30433 1.06473 1.46638 1.48536 1.54783 1.58953 1.87889 2.30891 2.49552 2.94727 3.26644 4.18558 4.39166 4.50729 4.60812 5.05037 5.24722 5.43104 5.56234 5.76425 6.09881 6.36676 6.60654 7.04727 7.20811 7.52704 9.04299 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.052092 B = 0.008617 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.385813 B = 3248.639923 C = 3383.971945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.314 3.686 3 C -0.217 4.217 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.185 4.185 7 C 0.284 3.716 8 H 0.034 0.966 9 N -0.821 5.821 10 C -0.545 4.545 11 H 0.052 0.948 12 C 0.040 3.960 13 N -0.876 5.876 14 Si 0.944 3.056 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.271 1.271 18 S 0.244 5.756 19 H 0.177 0.823 20 H 0.152 0.848 21 H 0.323 0.677 22 H 0.318 0.682 23 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 -3.222 2.311 7.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.001 4.001 3 C -0.337 4.337 4 C -0.066 4.066 5 C -0.204 4.204 6 C -0.309 4.309 7 C 0.172 3.828 8 H 0.052 0.948 9 N -0.349 5.349 10 C -0.584 4.584 11 H 0.070 0.930 12 C -0.165 4.165 13 N -0.511 5.511 14 Si 0.771 3.229 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.195 1.195 18 S 0.512 5.488 19 H 0.195 0.805 20 H 0.170 0.830 21 H 0.136 0.864 22 H 0.130 0.870 23 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.993 -1.576 1.823 8.348 hybrid contribution 0.344 -1.519 -0.396 1.607 sum -7.649 -3.096 1.427 8.374 Atomic orbital electron populations 1.81251 1.11974 1.08362 1.12069 1.24350 0.90898 0.92910 0.91914 1.20336 0.88485 1.01027 1.23857 1.20907 0.91370 0.99012 0.95312 1.20089 0.96725 0.96292 1.07337 1.26251 1.03487 0.99767 1.01362 1.17617 0.83385 0.87200 0.94629 0.94807 1.58933 1.60220 1.10732 1.04975 1.21135 1.00171 1.46084 0.91036 0.92987 1.25605 0.96390 0.94302 1.00181 1.70199 1.06446 1.41067 1.33376 0.85795 0.77196 0.78409 0.81541 1.20433 1.21135 1.19531 1.82921 0.92577 1.08023 1.65289 0.80523 0.83029 0.86392 0.86966 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.49 18.54 19.00 0.35 -14.14 14 2 C 0.31 9.03 15.83 88.33 1.40 10.43 14 3 C -0.22 -5.99 6.32 23.14 0.15 -5.84 14 4 C -0.03 -0.73 10.24 21.74 0.22 -0.51 14 5 C -0.18 -5.29 9.98 21.09 0.21 -5.07 14 6 C -0.19 -6.56 5.18 24.66 0.13 -6.43 14 7 C 0.28 12.58 3.02 43.42 0.13 12.71 14 8 H 0.03 1.68 8.11 -2.38 -0.02 1.66 14 9 N -0.82 -34.75 8.42 -174.95 -1.47 -36.22 14 10 C -0.55 -27.45 8.71 25.60 0.22 -27.22 14 11 H 0.05 2.62 7.74 -2.91 -0.02 2.60 14 12 C 0.04 2.08 5.39 84.66 0.46 2.53 14 13 N -0.88 -48.23 12.76 21.45 0.27 -47.96 14 14 Si 0.94 41.48 29.54 68.60 2.03 43.50 14 15 H -0.28 -12.09 7.11 99.48 0.71 -11.39 14 16 H -0.29 -12.43 7.11 99.48 0.71 -11.73 14 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 14 18 S 0.24 7.40 22.10 -56.49 -1.25 6.15 14 19 H 0.18 3.21 8.06 -2.91 -0.02 3.19 14 20 H 0.15 4.29 8.06 -2.91 -0.02 4.26 14 21 H 0.32 12.98 8.23 -89.69 -0.74 12.24 14 22 H 0.32 11.76 9.06 -89.69 -0.81 10.95 14 23 H 0.26 13.61 8.31 -92.70 -0.77 12.84 14 Total: -1.00 -56.91 234.92 2.56 -54.35 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.29 Total: 13.72 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 2.92 Total: -19.41 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -0.85 Total: -98.32 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 16 Polarization: 7.40 SS G_CDS: -1.25 Total: 6.15 kcal Total: -56.91 2.56 -54.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591061.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.120 kcal (2) G-P(sol) polarization free energy of solvation -56.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds