Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.35950 * 123.45222 * 94.04447 * 3 2 1 5 5 S 1.70440 * 110.83235 * 179.97438 * 4 3 2 6 6 C 1.75509 * 92.43973 * 359.82805 * 5 4 3 7 7 C 1.32818 * 110.55991 * 0.31107 * 6 5 4 8 8 C 1.50703 * 123.46715 * 179.90376 * 7 6 5 9 9 H 1.08994 * 109.47275 * 144.70584 * 8 7 6 10 10 N 1.46898 * 109.46797 * 24.70099 * 8 7 6 11 11 C 1.50700 * 109.47148 * 264.70360 * 8 7 6 12 12 H 1.08002 * 119.99770 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00083 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 8 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 H 1.08000 * 124.58416 * 0.02562 * 4 3 2 20 20 H 1.08006 * 124.72023 * 180.22954 * 6 5 4 21 21 H 1.00892 * 111.00332 * 300.00256 * 10 8 7 22 22 H 1.00905 * 110.99665 * 63.96030 * 10 8 7 23 23 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3174 0.0810 -1.1315 5 16 4.9806 0.0562 -0.7600 6 6 4.6705 -0.0603 0.9636 7 6 3.3640 -0.0833 1.2019 8 6 2.7731 -0.1807 2.5848 9 1 1.8560 0.4065 2.6303 10 7 3.7357 0.3375 3.5661 11 6 2.4629 -1.6218 2.8982 12 1 2.6730 -2.3903 2.1690 13 6 1.9118 -1.9592 4.1161 14 7 1.6564 -1.0235 5.0042 15 14 1.5279 -3.7456 4.5048 16 1 0.9467 -3.8417 5.8679 17 1 0.5548 -4.2698 3.5131 18 1 2.7776 -4.5453 4.4426 19 1 2.9134 0.1518 -2.1306 20 1 5.4355 -0.1079 1.7245 21 1 4.5950 -0.1907 3.5435 22 1 3.9110 1.3199 3.4166 23 1 1.8561 -0.0959 4.8025 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238599249.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = 33.162802 kcal Electronic energy + Delta-G solvation = -11032.790760 eV Core-core repulsion = 8971.625521 eV Total energy + Delta-G solvation = -2061.165240 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.74260 -37.32714 -35.85638 -33.28180 -30.20759 -28.18147 -25.92912 -23.90312 -21.07669 -19.18593 -18.58798 -17.66724 -16.47807 -15.90852 -15.57007 -15.18082 -14.80707 -14.36296 -14.05872 -13.87838 -13.51106 -13.21861 -12.88714 -12.64101 -12.51505 -11.97290 -11.75590 -10.89840 -10.50681 -9.80159 -9.38956 -9.10843 -8.39116 -6.26182 -0.20227 0.67730 0.91023 1.05059 1.53226 1.60660 1.68169 1.79061 2.44897 2.63161 3.21691 3.29678 3.84621 4.21617 4.34386 4.46712 4.76690 5.00161 5.14318 5.45641 5.92193 6.20931 6.49029 6.66403 6.77783 7.06406 7.64610 8.96518 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.011198 C = 0.010034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.434398 B = 2499.874083 C = 2789.769518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.296 3.704 3 C -0.086 4.086 4 C -0.186 4.186 5 S 0.286 5.714 6 C -0.254 4.254 7 C -0.081 4.081 8 C 0.261 3.739 9 H -0.005 1.005 10 N -0.835 5.835 11 C -0.612 4.612 12 H 0.039 0.961 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 1.105 2.895 16 H -0.286 1.286 17 H -0.285 1.285 18 H -0.266 1.266 19 H 0.203 0.797 20 H 0.175 0.825 21 H 0.336 0.664 22 H 0.322 0.678 23 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.784 2.200 -12.303 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.019 4.019 3 C -0.106 4.106 4 C -0.327 4.327 5 S 0.553 5.447 6 C -0.389 4.389 7 C -0.094 4.094 8 C 0.149 3.851 9 H 0.013 0.987 10 N -0.364 5.364 11 C -0.651 4.651 12 H 0.057 0.943 13 C -0.215 4.215 14 N -0.555 5.555 15 Si 0.928 3.072 16 H -0.212 1.212 17 H -0.211 1.211 18 H -0.191 1.191 19 H 0.220 0.780 20 H 0.192 0.808 21 H 0.150 0.850 22 H 0.134 0.866 23 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.244 1.095 -11.442 14.750 hybrid contribution -0.210 1.223 -0.797 1.474 sum 9.035 2.317 -12.238 15.387 Atomic orbital electron populations 1.81103 1.13232 1.11680 1.09247 1.25466 0.92588 0.91929 0.91910 1.16364 0.84801 1.15101 0.94341 1.25875 1.00827 1.03650 1.02367 1.82354 0.98775 1.66919 0.96617 1.25295 0.98486 1.13070 1.02032 1.21085 0.93442 0.98340 0.96583 1.17634 0.89974 0.94891 0.82605 0.98741 1.59078 1.16415 1.05682 1.55223 1.21918 1.47534 0.92076 1.03593 0.94294 1.26903 0.93050 1.08559 0.92966 1.70670 1.44298 1.03579 1.36915 0.83104 0.77211 0.71075 0.75775 1.21174 1.21095 1.19074 0.78031 0.80759 0.84966 0.86600 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -21.63 18.54 19.00 0.35 -21.28 14 2 C 0.30 12.36 14.95 88.34 1.32 13.68 14 3 C -0.09 -3.04 5.84 -20.99 -0.12 -3.16 14 4 C -0.19 -4.47 10.78 67.29 0.73 -3.74 14 5 S 0.29 5.55 23.02 -56.49 -1.30 4.25 14 6 C -0.25 -7.38 10.29 66.64 0.69 -6.69 14 7 C -0.08 -3.10 5.09 -19.47 -0.10 -3.20 14 8 C 0.26 12.76 2.30 43.42 0.10 12.86 14 9 H -0.01 -0.29 7.69 -2.39 -0.02 -0.31 14 10 N -0.83 -36.47 7.47 -174.96 -1.31 -37.78 14 11 C -0.61 -34.18 8.71 25.60 0.22 -33.96 14 12 H 0.04 2.18 7.74 -2.91 -0.02 2.16 14 13 C -0.01 -0.63 5.39 84.65 0.46 -0.18 14 14 N -0.92 -57.00 13.51 21.45 0.29 -56.71 14 15 Si 1.10 51.78 29.90 68.60 2.05 53.83 14 16 H -0.29 -13.47 7.11 99.48 0.71 -12.77 14 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 14 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 19 H 0.20 3.38 8.06 -2.91 -0.02 3.36 14 20 H 0.18 4.58 6.94 -2.91 -0.02 4.56 14 21 H 0.34 13.51 7.64 -89.70 -0.69 12.82 14 22 H 0.32 12.10 9.06 -89.69 -0.81 11.29 14 23 H 0.28 17.38 6.39 -92.70 -0.59 16.78 14 Total: -1.00 -70.42 230.63 3.32 -67.10 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -0.05 Total: 14.98 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 3.29 Total: -24.39 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -0.66 Total: -115.77 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.05 Total: 53.83 kcal Atomic # 16 Polarization: 5.55 SS G_CDS: -1.30 Total: 4.25 kcal Total: -70.42 3.32 -67.10 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238599249.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.267 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds