Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.36628 * 125.46112 * 269.06138 * 3 2 1 5 5 C 1.37606 * 113.27209 * 180.02562 * 4 3 2 6 6 C 1.33715 * 115.09485 * 359.97438 * 5 4 3 7 7 C 1.50698 * 124.51328 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.47174 * 20.00342 * 7 6 5 9 9 N 1.46897 * 109.47617 * 140.00132 * 7 6 5 10 10 C 1.50704 * 109.47504 * 260.00218 * 7 6 5 11 11 H 1.08004 * 119.99911 * 335.32931 * 10 7 6 12 12 C 1.37879 * 120.00161 * 155.32344 * 10 7 6 13 13 N 1.31515 * 119.99867 * 5.98131 * 12 10 7 14 14 Si 1.86803 * 119.99956 * 185.97898 * 12 10 7 15 15 H 1.48497 * 109.47217 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.46993 * 300.00117 * 14 12 10 17 17 H 1.48505 * 109.46927 * 60.00064 * 14 12 10 18 18 S 1.70610 * 110.97998 * 0.23248 * 6 5 4 19 19 H 1.08000 * 123.36408 * 0.04261 * 4 3 2 20 20 H 1.07997 * 122.45445 * 179.97438 * 5 4 3 21 21 H 1.00905 * 110.99840 * 55.78677 * 9 7 6 22 22 H 1.00899 * 111.00679 * 179.74145 * 9 7 6 23 23 H 0.96997 * 120.00013 * 355.09910 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3606 0.0192 1.1127 5 6 4.7057 0.0156 0.8222 6 6 5.0043 -0.0057 -0.4810 7 6 6.4054 -0.0130 -1.0359 8 1 7.0993 -0.3509 -0.2661 9 7 6.4713 -0.9224 -2.1876 10 6 6.7798 1.3796 -1.4735 11 1 6.0090 2.0869 -1.7419 12 6 8.1065 1.7509 -1.5311 13 7 9.0489 0.8585 -1.3187 14 14 8.5652 3.5215 -1.9108 15 1 10.0437 3.6597 -1.9153 16 1 8.0294 3.8966 -3.2440 17 1 7.9870 4.4155 -0.8755 18 16 3.5880 -0.0163 -1.4322 19 1 2.9705 0.0349 2.1197 20 1 5.4646 0.0290 1.5905 21 1 5.7884 -0.6708 -2.8865 22 1 7.4005 -0.9418 -2.5805 23 1 8.8115 -0.0434 -1.0520 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238618589.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = 30.468674 kcal Electronic energy + Delta-G solvation = -10728.382443 eV Core-core repulsion = 8667.100377 eV Total energy + Delta-G solvation = -2061.282066 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.31356 -37.73585 -36.58462 -33.46596 -30.70873 -27.71158 -25.92822 -23.33217 -21.75177 -19.67345 -18.84336 -17.23675 -16.39935 -15.70980 -15.48693 -15.39226 -14.89976 -14.53465 -14.37090 -13.97487 -13.33972 -13.23013 -13.03878 -12.63587 -12.22262 -11.94922 -11.64249 -11.49172 -10.73693 -9.75062 -9.47031 -9.23784 -8.59227 -6.45824 -0.39597 0.27812 1.02517 1.49359 1.57454 1.60749 1.80327 1.86516 2.29263 2.53402 2.93045 3.11896 3.86456 4.35535 4.46283 4.55108 4.89902 5.02821 5.39808 5.45818 5.78123 6.04514 6.35582 6.42669 6.50268 6.70944 7.33176 8.69743 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.050063 B = 0.008706 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.155678 B = 3215.468928 C = 3355.818254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.315 3.685 3 C -0.218 4.218 4 C -0.027 4.027 5 C -0.182 4.182 6 C -0.140 4.140 7 C 0.249 3.751 8 H 0.039 0.961 9 N -0.844 5.844 10 C -0.633 4.633 11 H 0.048 0.952 12 C -0.012 4.012 13 N -0.923 5.923 14 Si 1.109 2.891 15 H -0.286 1.286 16 H -0.273 1.273 17 H -0.274 1.274 18 S 0.258 5.742 19 H 0.179 0.821 20 H 0.147 0.853 21 H 0.326 0.674 22 H 0.335 0.665 23 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.796 -0.367 1.677 7.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C 0.000 4.000 3 C -0.339 4.339 4 C -0.064 4.064 5 C -0.212 4.212 6 C -0.262 4.262 7 C 0.138 3.862 8 H 0.057 0.943 9 N -0.372 5.372 10 C -0.674 4.674 11 H 0.067 0.933 12 C -0.214 4.214 13 N -0.560 5.560 14 Si 0.931 3.069 15 H -0.211 1.211 16 H -0.199 1.199 17 H -0.200 1.200 18 S 0.525 5.475 19 H 0.197 0.803 20 H 0.164 0.836 21 H 0.137 0.863 22 H 0.147 0.853 23 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.741 0.004 0.369 7.749 hybrid contribution 0.061 -0.208 1.342 1.360 sum -7.680 -0.204 1.712 7.871 Atomic orbital electron populations 1.81252 1.11866 1.12222 1.08139 1.24289 0.90804 0.91876 0.92997 1.20323 0.88593 1.25139 0.99826 1.20822 0.91026 0.95255 0.99306 1.19988 0.96948 1.08563 0.95684 1.24689 1.01249 1.01411 0.98807 1.17675 0.86831 0.90844 0.90836 0.94299 1.59585 1.10237 1.55439 1.11898 1.22794 0.95071 0.99338 1.50149 0.93341 1.27063 0.92884 1.08118 0.93309 1.70950 1.35999 1.05567 1.43444 0.83003 0.75890 0.70577 0.77384 1.21147 1.19852 1.19954 1.82794 0.92018 1.67184 1.05462 0.80346 0.83561 0.86256 0.85323 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.60 18.54 19.00 0.35 -14.25 14 2 C 0.31 9.25 15.83 88.33 1.40 10.65 14 3 C -0.22 -6.28 6.32 23.14 0.15 -6.13 14 4 C -0.03 -0.73 10.24 21.74 0.22 -0.50 14 5 C -0.18 -5.93 9.98 21.09 0.21 -5.72 14 6 C -0.14 -5.24 5.23 24.66 0.13 -5.11 14 7 C 0.25 11.09 2.74 43.42 0.12 11.21 14 8 H 0.04 1.93 6.95 -2.39 -0.02 1.92 14 9 N -0.84 -34.72 9.18 -174.95 -1.61 -36.33 14 10 C -0.63 -31.30 8.58 25.60 0.22 -31.08 14 11 H 0.05 2.41 7.81 -2.91 -0.02 2.39 14 12 C -0.01 -0.61 5.45 84.65 0.46 -0.14 14 13 N -0.92 -50.38 13.63 21.45 0.29 -50.08 14 14 Si 1.11 46.01 29.91 68.60 2.05 48.06 14 15 H -0.29 -12.05 7.11 99.48 0.71 -11.35 14 16 H -0.27 -10.67 7.11 99.48 0.71 -9.96 14 17 H -0.27 -10.80 7.11 99.48 0.71 -10.09 14 18 S 0.26 8.11 21.99 -56.49 -1.24 6.87 14 19 H 0.18 3.47 8.06 -2.91 -0.02 3.44 14 20 H 0.15 4.55 8.06 -2.91 -0.02 4.53 14 21 H 0.33 12.45 8.08 -89.69 -0.73 11.73 14 22 H 0.34 14.60 8.58 -89.69 -0.77 13.83 14 23 H 0.26 14.41 6.36 -92.71 -0.59 13.82 14 Total: -1.00 -55.01 232.82 2.70 -52.30 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -0.05 Total: 20.25 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 2.91 Total: -26.82 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -0.96 Total: -100.66 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.05 Total: 48.06 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -1.24 Total: 6.87 kcal Total: -55.01 2.70 -52.30 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238618589.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.769 kcal (2) G-P(sol) polarization free energy of solvation -55.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds