Wall clock time and date at job start Mon Mar 30 2020 02:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86801 * 119.99989 * 2 1 4 4 H 1.48501 * 109.46922 * 87.38224 * 3 2 1 5 5 H 1.48499 * 109.47430 * 207.38707 * 3 2 1 6 6 H 1.48504 * 109.47146 * 327.38987 * 3 2 1 7 7 C 1.40270 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00051 * 11.34908 * 7 2 1 9 9 C 1.40635 * 119.99987 * 191.35481 * 7 2 1 10 10 C 1.40942 * 120.54327 * 33.98680 * 9 7 2 11 11 C 1.36241 * 120.03832 * 179.71621 * 10 9 7 12 12 C 1.39291 * 121.25786 * 0.56346 * 11 10 9 13 13 O 1.35684 * 119.44049 * 179.68905 * 12 11 10 14 14 C 1.38871 * 121.12602 * 359.71641 * 12 11 10 15 15 C 1.39240 * 119.85023 * 359.97438 * 14 12 11 16 16 C 1.47296 * 120.59430 * 179.97438 * 15 14 12 17 17 O 1.21530 * 120.00187 * 175.49087 * 16 15 14 18 18 O 1.34812 * 119.99993 * 355.49376 * 16 15 14 19 19 H 0.97002 * 120.00624 * 359.97438 * 1 2 3 20 20 H 1.07996 * 119.97546 * 359.97438 * 10 9 7 21 21 H 1.08000 * 119.37076 * 180.28147 * 11 10 9 22 22 H 0.96699 * 113.99825 * 270.02588 * 13 12 11 23 23 H 1.08002 * 120.07712 * 180.02562 * 14 12 11 24 24 H 0.96692 * 117.00067 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4325 2.0784 1.3986 5 1 3.5646 1.4249 -0.6440 6 1 1.4666 2.6361 -0.7545 7 6 2.0079 -1.2147 -0.0005 8 1 1.4838 -2.1408 -0.1850 9 6 3.3936 -1.2267 0.2392 10 6 3.9750 -0.2983 1.1261 11 6 5.3178 -0.3228 1.3553 12 6 6.1430 -1.2467 0.7183 13 8 7.4764 -1.2341 0.9690 14 6 5.6243 -2.1802 -0.1694 15 6 4.2572 -2.2009 -0.4331 16 6 3.6896 -3.1835 -1.3722 17 8 2.4866 -3.2464 -1.5325 18 8 4.5047 -4.0133 -2.0538 19 1 -0.4851 0.8400 0.0004 20 1 3.3551 0.4302 1.6275 21 1 5.7513 0.3906 2.0405 22 1 7.9828 -0.6632 0.3751 23 1 6.2796 -2.8891 -0.6536 24 1 4.0861 -4.6407 -2.6588 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238656264.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:31 Heat of formation + Delta-G solvation = -118.405923 kcal Electronic energy + Delta-G solvation = -13222.807938 eV Core-core repulsion = 10680.024563 eV Total energy + Delta-G solvation = -2542.783375 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 208.057 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.18917 -38.00138 -35.87535 -34.89552 -33.59294 -30.39134 -29.79697 -25.29897 -23.09407 -21.60050 -20.03654 -17.82210 -17.57474 -16.86433 -15.69753 -15.30273 -14.50817 -14.29437 -14.10302 -13.79975 -13.10467 -12.69526 -12.26947 -11.76011 -11.34359 -11.08075 -10.72769 -10.56969 -10.50525 -10.12132 -9.80518 -9.42620 -8.96807 -8.06519 -7.58118 -7.20180 -4.73432 1.83708 2.37941 2.93453 3.03281 3.12858 3.64636 3.76308 4.09465 4.29724 5.04599 5.31086 5.81093 5.86835 6.40044 6.47912 6.49480 6.83684 7.01929 7.11713 7.36176 7.46941 7.55933 7.64484 8.15449 8.26907 8.56010 8.63714 9.05030 9.74400 Molecular weight = 208.06amu Principal moments of inertia in cm(-1) A = 0.025883 B = 0.016367 C = 0.010645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.540381 B = 1710.314388 C = 2629.671964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.239 1.239 6 H -0.285 1.285 7 C -0.382 4.382 8 H 0.125 0.875 9 C 0.114 3.886 10 C -0.223 4.223 11 C -0.066 4.066 12 C -0.065 4.065 13 O -0.500 6.500 14 C -0.026 4.026 15 C -0.245 4.245 16 C 0.518 3.482 17 O -0.520 6.520 18 O -0.534 6.534 19 H 0.293 0.707 20 H 0.111 0.889 21 H 0.103 0.897 22 H 0.357 0.643 23 H 0.115 0.885 24 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 1.247 -1.381 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.162 1.162 6 H -0.212 1.212 7 C -0.407 4.407 8 H 0.143 0.857 9 C 0.109 3.891 10 C -0.242 4.242 11 C -0.085 4.085 12 C -0.109 4.109 13 O -0.307 6.307 14 C -0.045 4.045 15 C -0.248 4.248 16 C 0.368 3.632 17 O -0.411 6.411 18 O -0.346 6.346 19 H 0.104 0.896 20 H 0.129 0.871 21 H 0.121 0.879 22 H 0.208 0.792 23 H 0.133 0.867 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.826 1.198 -0.699 5.989 hybrid contribution 0.065 0.648 -0.725 0.975 sum 5.890 1.846 -1.424 6.335 Atomic orbital electron populations 1.69560 1.08402 1.31212 1.30154 1.26542 0.95023 1.02261 0.91000 0.86276 0.81344 0.78898 0.79574 1.18954 1.16215 1.21204 1.20274 0.91036 0.96868 1.32495 0.85705 1.18495 0.92510 0.89272 0.88819 1.20640 0.94672 1.04576 1.04316 1.20671 0.93899 0.96305 0.97600 1.17730 0.82497 1.03279 1.07436 1.84869 1.16821 1.69784 1.59227 1.21245 0.94177 0.95717 0.93338 1.19407 0.92452 1.05821 1.07129 1.20855 0.84236 0.79209 0.78946 1.90817 1.16014 1.69052 1.65193 1.84627 1.44799 1.48808 1.56345 0.89562 0.87104 0.87874 0.79161 0.86747 0.74944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.66 13.92 55.56 0.77 -18.89 14 2 C 0.08 1.90 5.47 -17.29 -0.09 1.80 14 3 Si 0.91 19.47 24.47 -169.99 -4.16 15.31 14 4 H -0.26 -5.32 6.72 56.52 0.38 -4.94 14 5 H -0.24 -5.22 6.71 56.52 0.38 -4.84 14 6 H -0.29 -5.83 7.11 56.52 0.40 -5.43 14 7 C -0.38 -10.27 8.48 -37.91 -0.32 -10.59 14 8 H 0.13 3.70 6.02 -52.49 -0.32 3.39 14 9 C 0.11 2.87 5.23 -104.63 -0.55 2.32 14 10 C -0.22 -5.15 6.96 -39.28 -0.27 -5.42 14 11 C -0.07 -1.39 9.84 -39.91 -0.39 -1.78 14 12 C -0.07 -1.37 6.70 -38.96 -0.26 -1.63 14 13 O -0.50 -9.20 13.46 -18.76 -0.25 -9.46 14 14 C -0.03 -0.56 9.55 -38.98 -0.37 -0.93 14 15 C -0.25 -5.88 6.07 -102.50 -0.62 -6.50 14 16 C 0.52 11.95 8.25 34.41 0.28 12.23 14 17 O -0.52 -13.44 14.51 -19.29 -0.28 -13.72 14 18 O -0.53 -9.75 12.72 -40.80 -0.52 -10.26 14 19 H 0.29 6.62 8.29 -40.82 -0.34 6.28 14 20 H 0.11 2.45 4.75 -52.49 -0.25 2.20 14 21 H 0.10 1.90 8.06 -52.49 -0.42 1.48 14 22 H 0.36 4.82 9.06 45.56 0.41 5.23 14 23 H 0.11 2.26 7.64 -52.49 -0.40 1.86 14 24 H 0.39 5.16 9.11 45.56 0.42 5.58 14 LS Contribution 219.09 15.07 3.30 3.30 Total: -1.00 -29.92 219.09 -3.48 -33.40 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.26 Total: 10.81 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -2.60 Total: -10.49 kcal Atomic # 7 Polarization: -19.66 SS G_CDS: 0.77 Total: -18.89 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.05 Total: -33.44 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.16 Total: 15.31 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -29.92 -3.48 -33.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238656264.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.008 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds