Wall clock time and date at job start Mon Mar 30 2020 02:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47240 * 270.00201 * 3 2 1 5 5 H 1.48498 * 109.47099 * 29.99998 * 3 2 1 6 6 H 1.48497 * 109.47071 * 150.00157 * 3 2 1 7 7 C 1.38860 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00612 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99883 * 359.97438 * 7 2 1 10 10 C 1.76197 * 100.00132 * 185.65527 * 9 7 2 11 11 C 1.39118 * 120.21115 * 6.82852 * 10 9 7 12 12 C 1.37890 * 120.07401 * 180.02562 * 11 10 9 13 13 C 1.38755 * 120.51159 * 359.97334 * 12 11 10 14 14 C 1.37660 * 120.42790 * 359.97438 * 13 12 11 15 15 C 1.40034 * 119.91018 * 0.02562 * 14 13 12 16 16 C 1.46609 * 120.25034 * 179.97438 * 15 14 13 17 17 O 1.21333 * 119.99729 * 180.02562 * 16 15 14 18 18 H 0.96995 * 119.99665 * 0.02562 * 1 2 3 19 19 H 1.07998 * 119.96261 * 0.02562 * 11 10 9 20 20 H 1.08004 * 119.74246 * 180.02562 * 12 11 10 21 21 H 1.08000 * 119.78767 * 180.02562 * 13 12 11 22 22 H 1.07997 * 120.04552 * 179.75167 * 14 13 12 23 23 H 1.08005 * 119.99718 * 359.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0094 -1.2025 -0.0005 8 1 3.0893 -1.2026 -0.0001 9 16 1.1284 -2.7285 -0.0005 10 6 2.4709 -3.8569 0.1697 11 6 3.7586 -3.3833 0.3999 12 6 4.8072 -4.2689 0.5321 13 6 4.5907 -5.6362 0.4380 14 6 3.3249 -6.1277 0.2117 15 6 2.2470 -5.2443 0.0746 16 6 0.8959 -5.7596 -0.1671 17 8 -0.0346 -4.9901 -0.2857 18 1 -0.4849 0.8400 -0.0004 19 1 3.9371 -2.3209 0.4751 20 1 5.8046 -3.8954 0.7112 21 1 5.4204 -6.3194 0.5439 22 1 3.1640 -7.1929 0.1356 23 1 0.7291 -6.8242 -0.2405 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238680739.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:07 Heat of formation + Delta-G solvation = -31.179005 kcal Electronic energy + Delta-G solvation = -10821.706001 eV Core-core repulsion = 8725.457940 eV Total energy + Delta-G solvation = -2096.248061 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.33159 -38.70103 -34.81348 -32.22495 -31.74780 -27.88131 -25.60544 -23.43109 -22.01010 -19.72178 -18.21254 -17.35389 -16.93442 -16.44961 -15.51766 -15.18370 -15.01476 -14.84597 -14.57506 -13.45997 -13.32772 -13.00954 -12.90315 -12.53878 -12.06643 -11.48566 -11.42688 -11.13889 -10.41587 -9.85213 -9.77110 -8.52778 -8.49631 -6.30165 -0.09266 0.57992 1.24393 1.34377 1.42954 1.61761 1.75582 2.17710 2.84280 3.04263 3.18500 3.61125 4.08095 4.27246 4.48168 4.68109 4.81666 4.91220 5.19750 5.37356 5.50211 5.60845 5.69347 6.08022 6.19899 6.81031 6.91628 8.56038 Molecular weight = 208.03amu Principal moments of inertia in cm(-1) A = 0.039934 B = 0.011343 C = 0.008877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.989470 B = 2467.804654 C = 3153.557647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.025 3.975 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.603 4.603 8 H 0.093 0.907 9 S 0.058 5.942 10 C -0.077 4.077 11 C -0.185 4.185 12 C -0.069 4.069 13 C -0.168 4.168 14 C -0.035 4.035 15 C -0.236 4.236 16 C 0.363 3.637 17 O -0.495 6.495 18 H 0.277 0.723 19 H 0.114 0.886 20 H 0.144 0.856 21 H 0.163 0.837 22 H 0.176 0.824 23 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.289 -10.974 0.824 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.181 4.181 3 Si 0.815 3.185 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.750 4.750 8 H 0.111 0.889 9 S 0.317 5.683 10 C -0.194 4.194 11 C -0.210 4.210 12 C -0.090 4.090 13 C -0.190 4.190 14 C -0.054 4.054 15 C -0.247 4.247 16 C 0.224 3.776 17 O -0.373 6.373 18 H 0.086 0.914 19 H 0.131 0.869 20 H 0.162 0.838 21 H 0.181 0.819 22 H 0.193 0.807 23 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.206 -10.377 0.644 12.650 hybrid contribution 1.503 1.596 0.132 2.197 sum 8.709 -8.781 0.776 12.392 Atomic orbital electron populations 1.70095 1.08016 1.29345 1.46332 1.26163 0.95889 1.03467 0.92554 0.85018 0.78410 0.75955 0.79084 1.19046 1.19594 1.18287 1.24209 0.96985 0.94236 1.59541 0.88916 1.84681 1.07098 0.95994 1.80538 1.23303 0.99309 0.98190 0.98644 1.21451 0.92737 1.00718 1.06055 1.21567 0.98300 0.94171 0.94988 1.21385 0.98172 0.94840 1.04650 1.21665 0.90783 1.00261 0.92658 1.20926 0.98826 0.91605 1.13382 1.24647 0.85587 0.96473 0.70850 1.90555 1.45753 1.63021 1.37929 0.91358 0.86878 0.83784 0.81935 0.80668 0.82525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.08 13.22 21.65 0.29 -54.80 14 2 C 0.03 1.45 5.49 84.89 0.47 1.91 14 3 Si 0.99 43.91 29.55 68.60 2.03 45.93 14 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 14 5 H -0.27 -11.48 7.11 99.48 0.71 -10.77 14 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 14 7 C -0.60 -35.36 9.00 67.97 0.61 -34.74 14 8 H 0.09 5.16 4.98 -2.91 -0.01 5.15 14 9 S 0.06 3.31 18.57 -56.49 -1.05 2.26 14 10 C -0.08 -3.56 6.16 23.12 0.14 -3.41 14 11 C -0.18 -7.76 9.22 22.40 0.21 -7.55 14 12 C -0.07 -2.11 10.02 22.31 0.22 -1.89 14 13 C -0.17 -4.06 10.02 22.26 0.22 -3.83 14 14 C -0.03 -0.86 9.79 22.57 0.22 -0.64 14 15 C -0.24 -8.55 5.89 -20.02 -0.12 -8.67 14 16 C 0.36 12.30 11.42 70.01 0.80 13.10 14 17 O -0.49 -22.77 14.60 -3.19 -0.05 -22.82 14 18 H 0.28 15.56 8.31 -92.71 -0.77 14.79 14 19 H 0.11 5.20 5.04 -2.91 -0.01 5.18 14 20 H 0.14 3.43 8.06 -2.91 -0.02 3.41 14 21 H 0.16 2.47 8.06 -2.91 -0.02 2.45 14 22 H 0.18 2.47 8.06 -2.91 -0.02 2.45 14 23 H 0.16 3.12 8.06 -2.91 -0.02 3.10 14 Total: -1.00 -75.35 224.83 5.22 -70.12 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.23 Total: 5.03 kcal Atomic # 6 Polarization: -48.51 SS G_CDS: 2.78 Total: -45.73 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.29 Total: -54.80 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.05 Total: 2.26 kcal Total: -75.35 5.22 -70.12 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238680739.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.944 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds