Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47962 * 110.99770 * 2 1 4 4 C 1.53934 * 86.18028 * 222.41359 * 3 2 1 5 5 N 1.46499 * 113.73736 * 138.07694 * 4 3 2 6 6 C 1.34505 * 125.67390 * 276.90320 * 5 4 3 7 7 C 1.39288 * 107.18648 * 180.02562 * 6 5 4 8 8 C 1.41589 * 126.55781 * 180.02562 * 7 6 5 9 9 H 1.08003 * 120.00109 * 0.02562 * 8 7 6 10 10 C 1.39697 * 120.00062 * 180.02562 * 8 7 6 11 11 N 1.31030 * 119.99844 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99967 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47464 * 89.99937 * 12 10 8 14 14 H 1.48497 * 109.47154 * 209.99609 * 12 10 8 15 15 H 1.48499 * 109.47286 * 329.99714 * 12 10 8 16 16 C 1.41881 * 106.88323 * 0.02562 * 7 6 5 17 17 N 1.30319 * 108.04850 * 359.97438 * 16 7 6 18 18 C 1.48186 * 111.07519 * 260.56463 * 2 1 3 19 19 H 1.09003 * 109.47238 * 60.00463 * 1 2 3 20 20 H 1.09002 * 109.47136 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47675 * 300.00314 * 1 2 3 22 22 H 1.08998 * 113.76241 * 108.10056 * 3 2 1 23 23 H 1.08999 * 113.76087 * 336.72691 * 3 2 1 24 24 H 1.09004 * 113.73608 * 269.25747 * 4 3 2 25 25 H 1.07998 * 126.40900 * 359.75690 * 6 5 4 26 26 H 0.97001 * 119.99976 * 180.02562 * 11 10 8 27 27 H 1.07996 * 125.97706 * 179.97438 * 16 7 6 28 28 H 1.09003 * 113.75678 * 23.23665 * 18 2 1 29 29 H 1.08996 * 113.82314 * 251.81246 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 -1.0359 5 7 3.2510 1.8154 -2.1392 6 6 2.4872 1.9330 -3.2401 7 6 3.0533 2.9317 -4.0289 8 6 2.5768 3.3887 -5.2815 9 1 1.6883 2.9522 -5.7132 10 6 3.2561 4.4041 -5.9590 11 7 4.3338 4.9341 -5.4350 12 14 2.6271 5.0075 -7.6111 13 1 1.6742 6.1266 -7.3994 14 1 3.7699 5.4794 -8.4335 15 1 1.9371 3.8961 -8.3140 16 6 4.1987 3.4036 -3.3371 17 7 4.3016 2.7349 -2.2234 18 6 2.0018 -0.2267 -1.3640 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 2.4459 1.6803 0.9482 23 1 1.3010 2.1198 -0.3942 24 1 3.9459 0.5069 -0.5952 25 1 1.6032 1.3574 -3.4715 26 1 4.8052 5.6395 -5.9052 27 1 4.8681 4.1810 -3.6745 28 1 1.3043 0.0404 -2.1580 29 1 2.4506 -1.2101 -1.5036 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257832327.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = 112.640032 kcal Electronic energy + Delta-G solvation = -13206.085857 eV Core-core repulsion = 10939.165895 eV Total energy + Delta-G solvation = -2266.919963 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.16398 -38.44371 -33.49522 -31.48118 -29.01260 -28.47808 -26.07891 -25.00780 -23.22794 -20.53208 -19.52518 -18.38656 -17.40437 -15.72575 -15.60990 -14.84991 -14.74408 -13.62015 -13.46012 -12.95410 -12.61139 -12.43231 -12.31703 -11.48016 -11.23413 -11.16832 -10.95896 -10.69294 -10.68776 -10.34470 -10.02621 -9.23262 -8.94557 -8.76860 -7.81406 -7.16376 -6.43442 -4.00268 3.03666 3.19931 3.23674 3.39176 3.66388 4.13308 4.14853 4.40944 4.73782 5.08018 5.13875 5.27872 5.45689 5.58389 5.60831 5.73227 5.81701 5.89144 6.14130 6.25839 6.41348 6.89100 6.97921 7.31876 7.51500 7.67716 8.14828 8.54567 8.65403 9.05701 9.16664 9.51154 10.56071 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.058235 B = 0.007700 C = 0.007080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.697562 B = 3635.324998 C = 3953.645347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.008 4.008 2 N -0.485 5.485 3 C -0.011 4.011 4 C 0.155 3.845 5 N -0.387 5.387 6 C -0.128 4.128 7 C -0.017 4.017 8 C -0.438 4.438 9 H 0.067 0.933 10 C 0.067 3.933 11 N -0.842 5.842 12 Si 0.915 3.085 13 H -0.274 1.274 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.032 3.968 17 N -0.338 5.338 18 C -0.004 4.004 19 H 0.037 0.963 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.137 0.863 26 H 0.274 0.726 27 H 0.203 0.797 28 H 0.083 0.917 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 -5.631 5.295 9.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 N -0.208 5.208 3 C -0.141 4.141 4 C 0.049 3.951 5 N -0.176 5.176 6 C -0.268 4.268 7 C -0.026 4.026 8 C -0.473 4.473 9 H 0.086 0.914 10 C -0.144 4.144 11 N -0.474 5.474 12 Si 0.741 3.259 13 H -0.200 1.200 14 H -0.206 1.206 15 H -0.192 1.192 16 C -0.155 4.155 17 N -0.159 5.159 18 C -0.133 4.133 19 H 0.056 0.944 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.110 0.890 23 H 0.094 0.906 24 H 0.129 0.871 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.219 0.781 28 H 0.101 0.899 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.968 -6.156 6.871 10.043 hybrid contribution -1.270 0.910 -2.170 2.674 sum -5.238 -5.246 4.701 8.779 Atomic orbital electron populations 1.22831 0.89391 1.02192 1.01292 1.68431 1.09309 1.18934 1.24114 1.24541 0.97703 0.91269 1.00599 1.22577 0.97758 0.88209 0.86516 1.47371 1.22676 1.31320 1.16262 1.22019 1.02991 1.09171 0.92576 1.18215 0.94385 0.94714 0.95334 1.18728 1.10090 1.16659 1.01794 0.91431 1.25641 0.94160 0.95564 0.98995 1.69454 1.16255 1.23545 1.38106 0.86212 0.78740 0.79243 0.81709 1.20007 1.20600 1.19191 1.25127 0.99656 1.00065 0.90678 1.76569 1.09408 1.06425 1.23498 1.24492 0.97308 0.99936 0.91588 0.94415 0.91214 0.91405 0.88968 0.90564 0.87079 0.84574 0.91553 0.78097 0.89884 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.06 0.58 0.49 15 2 N -0.49 -6.87 6.55 -246.55 -1.62 -8.49 15 3 C -0.01 -0.17 7.79 -2.76 -0.02 -0.19 15 4 C 0.15 2.75 5.19 -69.63 -0.36 2.39 15 5 N -0.39 -8.84 3.78 -55.05 -0.21 -9.05 15 6 C -0.13 -3.11 10.75 -15.99 -0.17 -3.28 15 7 C -0.02 -0.46 5.93 -106.84 -0.63 -1.09 15 8 C -0.44 -12.01 9.40 -37.76 -0.35 -12.37 15 9 H 0.07 1.78 7.84 -52.48 -0.41 1.36 15 10 C 0.07 1.74 5.49 -17.35 -0.10 1.65 15 11 N -0.84 -22.38 10.33 55.54 0.57 -21.80 15 12 Si 0.91 19.66 29.56 -169.99 -5.02 14.63 15 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 16 C 0.03 0.88 10.91 -16.80 -0.18 0.70 15 17 N -0.34 -8.69 12.47 30.97 0.39 -8.31 15 18 C 0.00 -0.05 7.35 -2.63 -0.02 -0.07 15 19 H 0.04 0.46 7.63 -51.93 -0.40 0.07 15 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.09 1.34 8.14 -51.93 -0.42 0.91 15 23 H 0.08 1.28 7.92 -51.93 -0.41 0.87 15 24 H 0.11 1.89 8.14 -51.93 -0.42 1.47 15 25 H 0.14 2.95 6.66 -52.49 -0.35 2.61 15 26 H 0.27 6.69 8.30 -40.82 -0.34 6.36 15 27 H 0.20 5.60 5.77 -52.49 -0.30 5.29 15 28 H 0.08 1.28 5.76 -51.93 -0.30 0.98 15 29 H 0.09 1.28 8.14 -51.93 -0.42 0.85 15 LS Contribution 247.07 15.07 3.72 3.72 Total: -1.00 -29.06 247.07 -6.85 -35.91 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.42 Total: 5.18 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.26 Total: -11.79 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.86 Total: -47.65 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.06 -6.85 -35.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257832327.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.545 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds