Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47963 * 110.99656 * 2 1 4 4 C 1.53938 * 86.17992 * 222.42152 * 3 2 1 5 5 N 1.46495 * 113.73503 * 138.08298 * 4 3 2 6 6 N 1.40032 * 126.20233 * 301.86984 * 5 4 3 7 7 C 1.31237 * 109.11143 * 180.02562 * 6 5 4 8 8 C 1.38696 * 109.08025 * 0.26860 * 7 6 5 9 9 C 1.37461 * 126.20771 * 121.90418 * 5 4 3 10 10 C 1.40232 * 126.65611 * 0.02562 * 9 5 4 11 11 H 1.07998 * 120.00332 * 0.02562 * 10 9 5 12 12 C 1.40174 * 120.00105 * 180.02562 * 10 9 5 13 13 N 1.30765 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00404 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47238 * 89.99533 * 14 12 10 16 16 H 1.48500 * 109.47194 * 209.99827 * 14 12 10 17 17 H 1.48507 * 109.47039 * 329.99857 * 14 12 10 18 18 C 1.48190 * 111.06812 * 260.56831 * 2 1 3 19 19 H 1.08994 * 109.47313 * 59.99786 * 1 2 3 20 20 H 1.08995 * 109.46898 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46649 * 300.00135 * 1 2 3 22 22 H 1.08996 * 113.76008 * 108.10377 * 3 2 1 23 23 H 1.09001 * 113.76383 * 336.73596 * 3 2 1 24 24 H 1.09007 * 113.73087 * 269.25763 * 4 3 2 25 25 H 1.08002 * 125.45586 * 179.97438 * 7 6 5 26 26 H 1.07996 * 126.23341 * 179.72865 * 8 7 6 27 27 H 0.97001 * 120.00003 * 180.02562 * 13 12 10 28 28 H 1.09000 * 113.75557 * 23.23816 * 18 2 1 29 29 H 1.08999 * 113.82681 * 251.80626 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8794 -1.0361 5 7 3.2508 1.8156 -2.1392 6 7 2.2807 2.3111 -3.0192 7 6 2.8529 3.1236 -3.8763 8 6 4.2107 3.1900 -3.6011 9 6 4.4578 2.3665 -2.4986 10 6 5.6975 2.1407 -1.8833 11 1 5.7666 1.4741 -1.0364 12 6 6.8471 2.7801 -2.3674 13 7 6.7633 3.5877 -3.3926 14 14 8.4986 2.4789 -1.5484 15 1 9.1696 1.3238 -2.1972 16 1 9.3489 3.6882 -1.6889 17 1 8.2903 2.1849 -0.1076 18 6 2.0017 -0.2266 -1.3641 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 2.4460 1.6803 0.9482 23 1 1.3010 2.1198 -0.3940 24 1 3.9458 0.5069 -0.5954 25 1 2.3482 3.6519 -4.6717 26 1 4.9432 3.7736 -4.1388 27 1 7.5589 4.0299 -3.7279 28 1 1.3042 0.0405 -2.1579 29 1 2.4505 -1.2100 -1.5039 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257910308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = 103.994523 kcal Electronic energy + Delta-G solvation = -13409.795990 eV Core-core repulsion = 11142.501130 eV Total energy + Delta-G solvation = -2267.294860 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74101 -38.16919 -33.65400 -31.48608 -29.15965 -27.81068 -25.73953 -25.09487 -23.36386 -20.34318 -19.67634 -18.13450 -17.20075 -15.69467 -15.33264 -14.66416 -14.63435 -13.71349 -12.92144 -12.77284 -12.39663 -12.30776 -11.91059 -11.60024 -11.49905 -11.36351 -11.18998 -10.55155 -10.45669 -10.23224 -9.81067 -9.46242 -8.73114 -8.58962 -7.78781 -6.79337 -6.64280 -4.47645 2.92578 3.06275 3.09915 3.57104 3.80474 3.99058 4.47486 4.53412 5.01608 5.23742 5.30981 5.49851 5.54326 5.72806 5.91215 5.97083 6.00463 6.13495 6.35386 6.50919 6.53601 7.04134 7.24025 7.34351 7.49211 7.85776 8.11627 8.48406 8.70575 8.85065 9.20897 9.64650 10.24283 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.039975 B = 0.009955 C = 0.008305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.276231 B = 2811.861434 C = 3370.729337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 N -0.488 5.488 3 C -0.007 4.007 4 C 0.161 3.839 5 N -0.422 5.422 6 N -0.398 5.398 7 C 0.040 3.960 8 C -0.361 4.361 9 C 0.253 3.747 10 C -0.449 4.449 11 H 0.074 0.926 12 C 0.077 3.923 13 N -0.785 5.785 14 Si 0.923 3.077 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.263 1.263 18 C -0.003 4.003 19 H 0.037 0.963 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.118 0.882 25 H 0.144 0.856 26 H 0.158 0.842 27 H 0.278 0.722 28 H 0.084 0.916 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.279 -3.479 4.023 6.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.211 5.211 3 C -0.137 4.137 4 C 0.055 3.945 5 N -0.211 5.211 6 N -0.221 5.221 7 C -0.140 4.140 8 C -0.392 4.392 9 C 0.134 3.866 10 C -0.486 4.486 11 H 0.092 0.908 12 C -0.142 4.142 13 N -0.412 5.412 14 Si 0.747 3.253 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.187 1.187 18 C -0.132 4.132 19 H 0.056 0.944 20 H 0.084 0.916 21 H 0.082 0.918 22 H 0.105 0.895 23 H 0.095 0.905 24 H 0.136 0.864 25 H 0.161 0.839 26 H 0.175 0.825 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.162 -4.365 4.824 7.723 hybrid contribution 1.128 0.836 -0.568 1.515 sum -3.034 -3.528 4.256 6.306 Atomic orbital electron populations 1.22789 0.89855 1.01782 1.01047 1.68416 1.08969 1.18938 1.24738 1.24452 0.97862 0.91380 1.00018 1.22518 0.97953 0.88342 0.85649 1.48480 1.05879 1.39933 1.26781 1.76758 1.14853 1.21987 1.08499 1.23125 0.95429 0.97743 0.97707 1.22144 0.94696 1.15621 1.06747 1.18813 0.84843 0.90459 0.92440 1.18626 0.90261 1.25400 1.14268 0.90758 1.25753 1.01002 0.93265 0.94192 1.69737 1.30614 1.21218 1.19637 0.86072 0.80281 0.78640 0.80264 1.19424 1.20114 1.18662 1.24450 0.97849 0.99716 0.91181 0.94430 0.91581 0.91776 0.89482 0.90452 0.86437 0.83853 0.82503 0.91072 0.89780 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.07 9.65 60.07 0.58 0.51 15 2 N -0.49 -8.12 6.55 -246.53 -1.62 -9.73 15 3 C -0.01 -0.13 7.79 -2.76 -0.02 -0.15 15 4 C 0.16 3.32 4.76 -69.62 -0.33 2.99 15 5 N -0.42 -10.52 3.77 -53.28 -0.20 -10.72 15 6 N -0.40 -10.07 12.00 30.45 0.37 -9.70 15 7 C 0.04 1.01 11.93 -17.64 -0.21 0.80 15 8 C -0.36 -9.91 9.77 -38.83 -0.38 -10.29 15 9 C 0.25 6.92 6.75 -84.01 -0.57 6.36 15 10 C -0.45 -11.81 9.07 -38.11 -0.35 -12.16 15 11 H 0.07 1.83 6.92 -52.49 -0.36 1.47 15 12 C 0.08 1.92 5.50 -17.28 -0.10 1.83 15 13 N -0.79 -20.17 10.30 55.56 0.57 -19.60 15 14 Si 0.92 18.46 29.56 -169.99 -5.03 13.43 15 15 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 16 H -0.28 -5.40 7.11 56.52 0.40 -4.99 15 17 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 18 C 0.00 -0.05 7.68 -2.63 -0.02 -0.07 15 19 H 0.04 0.56 7.63 -51.93 -0.40 0.16 15 20 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 23 H 0.08 1.51 7.92 -51.93 -0.41 1.09 15 24 H 0.12 2.36 7.06 -51.92 -0.37 2.00 15 25 H 0.14 3.09 8.06 -52.49 -0.42 2.66 15 26 H 0.16 4.43 5.73 -52.49 -0.30 4.13 15 27 H 0.28 6.46 8.29 -40.82 -0.34 6.12 15 28 H 0.08 1.63 7.23 -51.93 -0.38 1.25 15 29 H 0.09 1.42 8.14 -51.93 -0.42 0.99 15 LS Contribution 247.81 15.07 3.73 3.73 Total: -1.00 -28.72 247.81 -7.02 -35.74 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.46 Total: 7.03 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.39 Total: -10.19 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.88 Total: -49.75 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -28.72 -7.02 -35.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257910308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.737 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds