Wall clock time and date at job start Mon Mar 30 2020 02:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47963 * 110.99656 * 2 1 4 4 C 1.53938 * 86.17992 * 222.42152 * 3 2 1 5 5 N 1.46495 * 113.73503 * 138.08298 * 4 3 2 6 6 N 1.40032 * 126.20233 * 301.86984 * 5 4 3 7 7 C 1.31237 * 109.11143 * 180.02562 * 6 5 4 8 8 C 1.38696 * 109.08025 * 0.26860 * 7 6 5 9 9 C 1.37461 * 126.20771 * 121.90418 * 5 4 3 10 10 C 1.40232 * 126.65611 * 0.02562 * 9 5 4 11 11 H 1.07998 * 120.00332 * 0.02562 * 10 9 5 12 12 C 1.40174 * 120.00105 * 180.02562 * 10 9 5 13 13 N 1.30765 * 119.99592 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00404 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47238 * 89.99533 * 14 12 10 16 16 H 1.48500 * 109.47194 * 209.99827 * 14 12 10 17 17 H 1.48507 * 109.47039 * 329.99857 * 14 12 10 18 18 C 1.48190 * 111.06812 * 260.56831 * 2 1 3 19 19 H 1.08994 * 109.47313 * 59.99786 * 1 2 3 20 20 H 1.08995 * 109.46898 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46649 * 300.00135 * 1 2 3 22 22 H 1.08996 * 113.76008 * 108.10377 * 3 2 1 23 23 H 1.09001 * 113.76383 * 336.73596 * 3 2 1 24 24 H 1.09007 * 113.73087 * 269.25763 * 4 3 2 25 25 H 1.08002 * 125.45586 * 179.97438 * 7 6 5 26 26 H 1.07996 * 126.23341 * 179.72865 * 8 7 6 27 27 H 0.97001 * 120.00003 * 180.02562 * 13 12 10 28 28 H 1.09000 * 113.75557 * 23.23816 * 18 2 1 29 29 H 1.08999 * 113.82681 * 251.80626 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8794 -1.0361 5 7 3.2508 1.8156 -2.1392 6 7 2.2807 2.3111 -3.0192 7 6 2.8529 3.1236 -3.8763 8 6 4.2107 3.1900 -3.6011 9 6 4.4578 2.3665 -2.4986 10 6 5.6975 2.1407 -1.8833 11 1 5.7666 1.4741 -1.0364 12 6 6.8471 2.7801 -2.3674 13 7 6.7633 3.5877 -3.3926 14 14 8.4986 2.4789 -1.5484 15 1 9.1696 1.3238 -2.1972 16 1 9.3489 3.6882 -1.6889 17 1 8.2903 2.1849 -0.1076 18 6 2.0017 -0.2266 -1.3641 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 2.4460 1.6803 0.9482 23 1 1.3010 2.1198 -0.3940 24 1 3.9458 0.5069 -0.5954 25 1 2.3482 3.6519 -4.6717 26 1 4.9432 3.7736 -4.1388 27 1 7.5589 4.0299 -3.7279 28 1 1.3042 0.0405 -2.1579 29 1 2.4505 -1.2100 -1.5039 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257910308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:01 Heat of formation + Delta-G solvation = 83.622428 kcal Electronic energy + Delta-G solvation = -13410.679390 eV Core-core repulsion = 11142.501130 eV Total energy + Delta-G solvation = -2268.178260 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.38809 -39.90833 -35.57646 -33.14658 -30.97797 -29.50752 -27.19774 -27.07184 -24.85673 -21.99428 -21.61796 -19.87886 -19.02486 -17.58931 -16.76109 -16.28399 -16.05712 -15.33351 -14.61530 -14.35358 -14.19821 -13.78852 -13.69671 -13.42063 -13.22061 -12.94629 -12.54178 -12.14921 -11.95752 -11.76254 -11.73864 -11.28908 -10.67353 -10.01592 -9.72478 -8.78679 -8.52057 -6.48764 1.26203 1.43220 1.57880 1.75870 2.11714 2.31143 2.56048 2.97659 3.28905 3.65353 3.75141 4.06491 4.07902 4.45033 4.50431 4.52769 4.64636 4.70505 4.88917 4.93814 5.11945 5.17526 5.41090 5.52984 5.88767 5.91917 6.08850 6.49883 6.73061 6.85627 7.23961 7.66132 8.39217 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.039975 B = 0.009955 C = 0.008305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.276231 B = 2811.861434 C = 3370.729337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.479 5.479 3 C 0.002 3.998 4 C 0.138 3.862 5 N -0.425 5.425 6 N -0.402 5.402 7 C 0.035 3.965 8 C -0.396 4.396 9 C 0.226 3.774 10 C -0.476 4.476 11 H 0.083 0.917 12 C 0.034 3.966 13 N -0.814 5.814 14 Si 1.001 2.999 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.256 1.256 18 C 0.008 3.992 19 H 0.028 0.972 20 H 0.086 0.914 21 H 0.080 0.920 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.119 0.881 25 H 0.174 0.826 26 H 0.144 0.856 27 H 0.287 0.713 28 H 0.070 0.930 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -4.348 5.271 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 N -0.201 5.201 3 C -0.127 4.127 4 C 0.034 3.966 5 N -0.214 5.214 6 N -0.224 5.224 7 C -0.145 4.145 8 C -0.427 4.427 9 C 0.107 3.893 10 C -0.512 4.512 11 H 0.101 0.899 12 C -0.183 4.183 13 N -0.441 5.441 14 Si 0.821 3.179 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.179 1.179 18 C -0.122 4.122 19 H 0.046 0.954 20 H 0.105 0.895 21 H 0.099 0.901 22 H 0.120 0.880 23 H 0.081 0.919 24 H 0.137 0.863 25 H 0.191 0.809 26 H 0.161 0.839 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.879 -5.248 6.080 8.919 hybrid contribution 0.978 1.107 -0.970 1.768 sum -2.901 -4.141 5.109 7.188 Atomic orbital electron populations 1.22874 0.87924 1.03316 1.01413 1.68445 1.10824 1.17465 1.23399 1.24333 0.96776 0.91933 0.99705 1.22983 0.99123 0.89022 0.85507 1.48743 1.05001 1.40242 1.27401 1.76670 1.15379 1.21822 1.08567 1.23544 0.94827 0.97785 0.98384 1.22205 0.95626 1.16968 1.07884 1.19218 0.86152 0.91019 0.92930 1.19003 0.90745 1.26419 1.15003 0.89892 1.26802 1.04650 0.92353 0.94477 1.69814 1.32244 1.21487 1.20561 0.84910 0.74873 0.78845 0.79264 1.18658 1.19175 1.17915 1.24343 0.96713 0.99522 0.91587 0.95367 0.89485 0.90116 0.88007 0.91939 0.86308 0.80866 0.83912 0.90174 0.91212 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.07 15 2 N -0.48 -14.91 6.55 -933.88 -6.12 -21.03 15 3 C 0.00 0.08 7.79 86.41 0.67 0.76 15 4 C 0.14 5.60 4.76 46.56 0.22 5.82 15 5 N -0.43 -21.32 3.77 -322.48 -1.22 -22.54 15 6 N -0.40 -20.41 12.00 -57.58 -0.69 -21.10 15 7 C 0.04 1.80 11.93 84.89 1.01 2.81 15 8 C -0.40 -22.29 9.77 22.76 0.22 -22.06 15 9 C 0.23 12.60 6.75 39.13 0.26 12.86 15 10 C -0.48 -25.19 9.07 23.23 0.21 -24.98 15 11 H 0.08 4.08 6.92 -2.91 -0.02 4.06 15 12 C 0.03 1.68 5.50 85.32 0.47 2.15 15 13 N -0.81 -42.26 10.30 21.87 0.23 -42.03 15 14 Si 1.00 37.01 29.56 68.60 2.03 39.04 15 15 H -0.26 -9.34 7.11 99.48 0.71 -8.64 15 16 H -0.27 -9.42 7.11 99.48 0.71 -8.72 15 17 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 18 C 0.01 0.27 7.68 86.37 0.66 0.93 15 19 H 0.03 0.78 7.63 -2.39 -0.02 0.76 15 20 H 0.09 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.08 1.82 8.14 -2.38 -0.02 1.80 15 22 H 0.10 3.25 8.14 -2.39 -0.02 3.23 15 23 H 0.06 2.39 7.92 -2.39 -0.02 2.37 15 24 H 0.12 4.72 7.06 -2.38 -0.02 4.71 15 25 H 0.17 7.40 8.06 -2.91 -0.02 7.38 15 26 H 0.14 8.35 5.73 -2.91 -0.02 8.34 15 27 H 0.29 13.36 8.29 -92.71 -0.77 12.59 15 28 H 0.07 2.64 7.23 -2.39 -0.02 2.63 15 29 H 0.10 3.20 8.14 -2.39 -0.02 3.18 15 Total: -1.00 -61.45 247.81 0.34 -61.11 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 1.14 Total: 27.19 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 4.97 Total: -20.64 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -7.80 Total: -106.71 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -61.45 0.34 -61.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257910308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.737 kcal (2) G-P(sol) polarization free energy of solvation -61.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds