Wall clock time and date at job start Mon Mar 30 2020 02:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47405 * 275.41569 * 3 2 1 5 5 H 1.48500 * 109.46803 * 35.41243 * 3 2 1 6 6 H 1.48495 * 109.47455 * 155.41408 * 3 2 1 7 7 C 1.39904 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00113 * 341.73139 * 7 2 1 9 9 C 1.41165 * 120.00119 * 161.73412 * 7 2 1 10 10 C 1.40778 * 120.22256 * 330.15108 * 9 7 2 11 11 C 1.37873 * 119.82219 * 179.97438 * 10 9 7 12 12 O 1.35951 * 119.81988 * 180.02562 * 11 10 9 13 13 C 1.39297 * 120.36127 * 0.02562 * 11 10 9 14 14 C 1.38614 * 120.54359 * 0.23402 * 13 11 10 15 15 C 1.39013 * 120.02222 * 359.48818 * 14 13 11 16 16 O 1.36259 * 108.77755 * 180.30184 * 15 14 13 17 17 C 1.44298 * 105.38925 * 342.41443 * 16 15 14 18 18 O 1.36571 * 131.37490 * 179.77334 * 14 13 11 19 19 H 0.96998 * 120.00036 * 359.97438 * 1 2 3 20 20 H 1.08005 * 120.08992 * 359.95930 * 10 9 7 21 21 H 0.96701 * 113.99782 * 270.01854 * 12 11 10 22 22 H 1.08001 * 119.72826 * 179.97438 * 13 11 10 23 23 H 1.08993 * 110.98958 * 268.84484 * 17 16 15 24 24 H 1.09007 * 110.45295 * 145.90733 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3759 2.1126 -1.3938 5 1 1.5020 2.6169 0.8113 6 1 3.5928 1.4100 0.5825 7 6 2.0083 -1.2116 -0.0005 8 1 1.5092 -2.1235 0.2922 9 6 3.3666 -1.2422 -0.3837 10 6 3.8611 -0.3104 -1.3159 11 6 5.1893 -0.3474 -1.6839 12 8 5.6669 0.5528 -2.5838 13 6 6.0446 -1.3022 -1.1387 14 6 5.5725 -2.2303 -0.2237 15 6 4.2381 -2.2068 0.1653 16 8 4.0269 -3.2054 1.0681 17 6 5.1461 -4.1031 0.9151 18 8 6.2007 -3.2480 0.4357 19 1 -0.4850 0.8400 0.0004 20 1 3.2017 0.4315 -1.7419 21 1 5.6067 0.2596 -3.5033 22 1 7.0831 -1.3222 -1.4345 23 1 4.9243 -4.8830 0.1867 24 1 5.4159 -4.5427 1.8754 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257974361.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:33 Heat of formation + Delta-G solvation = -109.490934 kcal Electronic energy + Delta-G solvation = -13428.996229 eV Core-core repulsion = 10886.599437 eV Total energy + Delta-G solvation = -2542.396792 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 208.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.70498 -39.69891 -37.31122 -36.75317 -35.19558 -32.06326 -29.89652 -27.27950 -26.41263 -23.75399 -22.89467 -20.25132 -18.82135 -18.57170 -18.18859 -17.74830 -16.71316 -16.37658 -15.68675 -15.34566 -15.03297 -14.81892 -14.11147 -13.81733 -13.60151 -13.44931 -12.91508 -12.72195 -12.37361 -11.86175 -11.49375 -11.33497 -10.99975 -9.62174 -9.02085 -8.78443 -6.62757 0.40345 0.49824 1.25267 1.35828 1.46316 1.99091 2.08176 2.41242 2.86056 3.12742 3.56149 3.99480 4.00967 4.17650 4.36370 4.49223 4.71064 4.91876 5.16117 5.31489 5.46661 5.57274 5.75760 6.04660 6.23934 6.53465 6.63825 6.99548 8.05896 Molecular weight = 208.06amu Principal moments of inertia in cm(-1) A = 0.030676 B = 0.015415 C = 0.010996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.533548 B = 1816.032692 C = 2545.754915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.055 3.945 3 Si 0.962 3.038 4 H -0.247 1.247 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.467 4.467 8 H 0.059 0.941 9 C 0.107 3.893 10 C -0.264 4.264 11 C 0.162 3.838 12 O -0.501 6.501 13 C -0.239 4.239 14 C 0.074 3.926 15 C -0.107 4.107 16 O -0.332 6.332 17 C 0.203 3.797 18 O -0.326 6.326 19 H 0.300 0.700 20 H 0.123 0.877 21 H 0.410 0.590 22 H 0.141 0.859 23 H 0.092 0.908 24 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.922 -1.224 -2.936 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.162 4.162 3 Si 0.785 3.215 4 H -0.171 1.171 5 H -0.195 1.195 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.284 4.284 11 C 0.117 3.883 12 O -0.314 6.314 13 C -0.259 4.259 14 C 0.029 3.971 15 C -0.151 4.151 16 O -0.250 6.250 17 C 0.092 3.908 18 O -0.243 6.243 19 H 0.111 0.889 20 H 0.140 0.860 21 H 0.268 0.732 22 H 0.159 0.841 23 H 0.109 0.891 24 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.787 -0.903 -2.236 8.152 hybrid contribution -0.310 -0.153 -0.181 0.391 sum 7.477 -1.056 -2.418 7.928 Atomic orbital electron populations 1.69702 1.09033 1.32080 1.34675 1.26795 0.95393 1.03923 0.90117 0.85537 0.79226 0.76462 0.80301 1.17145 1.19547 1.18660 1.19292 0.93836 0.96044 1.40347 0.92324 1.16730 0.91783 0.90619 0.90478 1.21113 0.95984 1.05252 1.06037 1.17599 0.89669 0.88433 0.92618 1.84709 1.84492 1.41939 1.20215 1.19728 1.01478 0.99827 1.04841 1.19500 0.89338 0.92796 0.95416 1.20020 0.93778 1.00853 1.00480 1.87234 1.46765 1.35284 1.55698 1.25995 0.73110 0.88990 1.02683 1.87185 1.32636 1.35668 1.68810 0.88900 0.85963 0.73160 0.84074 0.89086 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.44 13.93 21.82 0.30 -44.14 14 2 C 0.06 2.92 5.40 85.24 0.46 3.38 14 3 Si 0.96 42.58 24.52 68.60 1.68 44.26 14 4 H -0.25 -10.08 6.70 99.48 0.67 -9.42 14 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 14 6 H -0.26 -12.37 6.86 99.48 0.68 -11.69 14 7 C -0.47 -26.60 9.55 23.39 0.22 -26.37 14 8 H 0.06 3.65 8.06 -2.91 -0.02 3.62 14 9 C 0.11 5.64 5.11 -21.23 -0.11 5.54 14 10 C -0.26 -12.42 7.09 22.80 0.16 -12.26 14 11 C 0.16 6.65 6.69 22.44 0.15 6.80 14 12 O -0.50 -16.65 13.49 -93.00 -1.25 -17.91 14 13 C -0.24 -9.71 9.99 22.61 0.23 -9.48 14 14 C 0.07 3.28 7.14 22.55 0.16 3.45 14 15 C -0.11 -5.36 6.90 23.16 0.16 -5.20 14 16 O -0.33 -15.49 11.40 -73.24 -0.84 -16.33 14 17 C 0.20 6.84 8.90 113.37 1.01 7.85 14 18 O -0.33 -12.75 11.41 -76.88 -0.88 -13.63 14 19 H 0.30 14.23 8.30 -92.71 -0.77 13.46 14 20 H 0.12 5.61 4.73 -2.91 -0.01 5.60 14 21 H 0.41 8.76 9.06 -74.06 -0.67 8.09 14 22 H 0.14 4.91 8.06 -2.91 -0.02 4.88 14 23 H 0.09 2.61 8.14 -2.39 -0.02 2.59 14 24 H 0.16 3.82 8.14 -2.38 -0.02 3.80 14 Total: -1.00 -65.40 216.69 1.98 -63.42 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.52 Total: 10.62 kcal Atomic # 6 Polarization: -28.74 SS G_CDS: 2.44 Total: -26.30 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.30 Total: -44.14 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -2.97 Total: -47.86 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.68 Total: 44.26 kcal Total: -65.40 1.98 -63.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257974361.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.073 kcal (2) G-P(sol) polarization free energy of solvation -65.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds