Wall clock time and date at job start Mon Mar 30 2020 02:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53010 * 109.46959 * 2 1 4 4 N 1.46503 * 109.47081 * 119.99560 * 2 1 3 5 5 C 1.36927 * 120.00426 * 296.79703 * 4 2 1 6 6 H 1.08006 * 120.00145 * 314.17095 * 5 4 2 7 7 C 1.38852 * 120.00339 * 134.16495 * 5 4 2 8 8 N 1.31527 * 120.00011 * 155.72642 * 7 5 4 9 9 Si 1.86799 * 119.99720 * 335.73187 * 7 5 4 10 10 H 1.48502 * 109.47163 * 90.62662 * 9 7 5 11 11 H 1.48506 * 109.46953 * 210.62346 * 9 7 5 12 12 H 1.48500 * 109.47347 * 330.62241 * 9 7 5 13 13 C 1.38522 * 119.99800 * 117.07557 * 4 2 1 14 14 C 1.39711 * 120.53628 * 348.86104 * 13 4 2 15 15 C 1.38130 * 118.32063 * 180.02562 * 14 13 4 16 16 N 1.32567 * 119.19697 * 359.97438 * 15 14 13 17 17 C 1.31790 * 121.02549 * 0.02562 * 16 15 14 18 18 N 1.31740 * 121.84370 * 359.71498 * 17 16 15 19 19 H 1.09000 * 109.47682 * 296.49811 * 1 2 3 20 20 H 1.08995 * 109.47370 * 56.50011 * 1 2 3 21 21 H 1.09004 * 109.47014 * 176.50037 * 1 2 3 22 22 H 1.08997 * 109.47330 * 239.99863 * 2 1 3 23 23 H 1.09001 * 109.46712 * 181.42830 * 3 2 1 24 24 H 1.08996 * 109.46770 * 301.42986 * 3 2 1 25 25 H 1.08993 * 109.46855 * 61.42886 * 3 2 1 26 26 H 0.97005 * 120.00410 * 180.02562 * 8 7 5 27 27 H 1.08005 * 120.84103 * 0.03161 * 14 13 4 28 28 H 1.07999 * 120.40293 * 180.02562 * 15 14 13 29 29 H 1.07999 * 119.07694 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.7425 -0.1857 2.4388 6 1 1.8716 0.8687 2.6342 7 6 1.2966 -1.0291 3.4477 8 7 1.4794 -0.7008 4.7081 9 14 0.4374 -2.6303 3.0147 10 1 1.4424 -3.7183 2.9081 11 1 -0.5459 -2.9669 4.0755 12 1 -0.2675 -2.4785 1.7165 13 6 2.7639 -1.8511 1.0701 14 6 2.8634 -2.5004 -0.1629 15 6 3.6185 -3.6547 -0.2367 16 7 4.2198 -4.1050 0.8556 17 6 4.1065 -3.4693 2.0045 18 7 3.4010 -2.3627 2.1199 19 1 -0.3634 0.4585 0.9197 20 1 -0.3634 0.5672 -0.8569 21 1 -0.3633 -1.0258 -0.0627 22 1 1.8933 -0.5138 -0.8899 23 1 3.1296 1.4427 -0.0256 24 1 1.6557 1.9637 -0.8769 25 1 1.6976 1.9489 0.9025 26 1 1.1683 -1.2901 5.4130 27 1 2.3626 -2.1097 -1.0365 28 1 3.7185 -4.1835 -1.1730 29 1 4.6094 -3.8643 2.8748 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259270925.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:59 Heat of formation + Delta-G solvation = 65.905804 kcal Electronic energy + Delta-G solvation = -13917.895199 eV Core-core repulsion = 11648.948688 eV Total energy + Delta-G solvation = -2268.946511 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 207.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.86574 -37.17933 -33.08762 -32.15103 -31.17571 -29.42370 -26.66174 -25.14102 -23.14674 -22.31173 -19.86640 -18.26170 -16.47455 -15.78281 -15.03141 -14.51610 -14.32192 -13.83381 -13.53517 -13.10671 -12.78868 -12.48169 -12.28580 -11.70305 -11.46750 -11.14886 -10.86878 -10.83255 -10.33754 -9.96220 -9.86503 -9.52164 -8.91068 -8.68087 -7.98001 -7.07353 -6.41499 -3.97990 2.07710 2.41973 3.24777 3.32785 3.38291 4.08023 4.31692 4.85351 5.12358 5.17430 5.36801 5.48811 5.70692 5.72292 5.81994 6.07483 6.15324 6.24146 6.32543 6.38417 6.45452 6.61673 6.77455 6.83629 7.30360 7.74394 7.81033 8.28353 8.58266 9.18788 9.29229 9.58671 10.66507 Molecular weight = 207.11amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.019851 C = 0.013792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.719923 B = 1410.189227 C = 2029.633739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 C -0.152 4.152 4 N -0.426 5.426 5 C -0.326 4.326 6 H 0.098 0.902 7 C 0.107 3.893 8 N -0.844 5.844 9 Si 0.871 3.129 10 H -0.268 1.268 11 H -0.291 1.291 12 H -0.269 1.269 13 C 0.395 3.605 14 C -0.335 4.335 15 C 0.162 3.838 16 N -0.609 5.609 17 C 0.322 3.678 18 N -0.547 5.547 19 H 0.071 0.929 20 H 0.053 0.947 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.274 0.726 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 -0.453 -8.717 8.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.026 3.974 3 C -0.210 4.210 4 N -0.121 5.121 5 C -0.454 4.454 6 H 0.115 0.885 7 C -0.104 4.104 8 N -0.476 5.476 9 Si 0.698 3.302 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.194 1.194 13 C 0.151 3.849 14 C -0.366 4.366 15 C 0.002 3.998 16 N -0.333 5.333 17 C 0.031 3.969 18 N -0.271 5.271 19 H 0.090 0.910 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.522 -0.522 -7.707 7.742 hybrid contribution -0.946 -0.573 -0.719 1.319 sum -1.468 -1.095 -8.426 8.623 Atomic orbital electron populations 1.22096 0.95528 1.01600 1.02166 1.21200 0.94153 0.93460 0.88612 1.22027 1.00912 0.96118 1.01918 1.42634 1.43273 1.20241 1.05945 1.18707 1.46006 0.96127 0.84536 0.88467 1.25221 0.93870 0.96929 0.94374 1.69851 1.40063 1.38258 0.99458 0.86974 0.79774 0.85158 0.78332 1.19288 1.21799 1.19379 1.18738 0.87390 0.90092 0.88697 1.21897 1.13047 1.02803 0.98889 1.22430 0.89735 0.91330 0.96344 1.68260 1.28336 1.36521 1.00169 1.24371 0.91028 0.87081 0.94435 1.68118 1.12673 1.14295 1.32052 0.90970 0.92801 0.93163 0.90669 0.92992 0.92746 0.91319 0.91605 0.85812 0.83895 0.80846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.26 37.15 0.34 -2.34 15 2 C 0.13 2.40 3.14 -67.93 -0.21 2.19 15 3 C -0.15 -2.51 9.12 37.16 0.34 -2.17 15 4 N -0.43 -9.94 2.07 -107.75 -0.22 -10.17 15 5 C -0.33 -8.62 8.18 -15.05 -0.12 -8.74 15 6 H 0.10 2.70 7.02 -52.48 -0.37 2.33 15 7 C 0.11 2.96 4.67 -17.45 -0.08 2.88 15 8 N -0.84 -24.24 13.96 55.49 0.77 -23.47 15 9 Si 0.87 22.22 25.74 -169.99 -4.37 17.85 15 10 H -0.27 -7.12 6.49 56.52 0.37 -6.75 15 11 H -0.29 -7.34 7.11 56.52 0.40 -6.93 15 12 H -0.27 -6.71 6.73 56.52 0.38 -6.33 15 13 C 0.39 9.38 5.24 -154.73 -0.81 8.57 15 14 C -0.33 -6.81 9.32 -39.07 -0.36 -7.18 15 15 C 0.16 3.12 11.29 -17.27 -0.20 2.92 15 16 N -0.61 -12.89 10.43 -14.66 -0.15 -13.04 15 17 C 0.32 7.21 12.07 -92.20 -1.11 6.09 15 18 N -0.55 -13.77 7.19 -13.79 -0.10 -13.86 15 19 H 0.07 1.36 7.62 -51.93 -0.40 0.97 15 20 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.05 0.91 7.76 -51.93 -0.40 0.51 15 22 H 0.08 1.26 5.52 -51.93 -0.29 0.97 15 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.07 1.23 6.93 -51.93 -0.36 0.87 15 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 27 H 0.12 2.16 6.07 -52.48 -0.32 1.84 15 28 H 0.14 2.15 8.06 -52.49 -0.42 1.73 15 29 H 0.17 3.36 8.06 -52.49 -0.42 2.93 15 LS Contribution 241.78 15.07 3.64 3.64 Total: -1.00 -30.45 241.78 -6.09 -36.53 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.44 Total: 0.30 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.22 Total: 2.22 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.30 Total: -60.54 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.37 Total: 17.85 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.45 -6.09 -36.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259270925.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.439 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds