Wall clock time and date at job start Mon Mar 30 2020 02:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34847 * 125.89119 * 2 1 4 4 C 1.40895 * 107.41664 * 180.02562 * 3 2 1 5 5 C 1.34850 * 107.41620 * 359.97438 * 4 3 2 6 6 C 1.50696 * 125.89248 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47296 * 84.97454 * 6 5 4 8 8 H 1.07993 * 119.99610 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00089 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99925 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00091 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47109 * 59.99553 * 11 9 7 13 13 H 1.48497 * 109.47191 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46671 * 299.99632 * 11 9 7 15 15 N 1.36342 * 125.88618 * 179.69364 * 2 1 3 16 16 C 1.46499 * 125.63792 * 359.97438 * 15 2 1 17 17 C 1.53002 * 109.47246 * 293.72674 * 16 15 2 18 18 C 1.53001 * 109.46985 * 53.72818 * 16 15 2 19 19 H 1.08998 * 109.47524 * 84.99863 * 1 2 3 20 20 H 1.09005 * 109.46864 * 325.00278 * 1 2 3 21 21 H 1.08994 * 109.47311 * 205.00530 * 1 2 3 22 22 H 1.07997 * 126.29526 * 359.97438 * 3 2 1 23 23 H 1.07991 * 126.29155 * 179.97438 * 4 3 2 24 24 H 1.09000 * 109.47580 * 204.97779 * 6 5 4 25 25 H 1.09008 * 109.47051 * 324.97091 * 6 5 4 26 26 H 0.96999 * 120.00008 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.47086 * 173.72532 * 16 15 2 28 28 H 1.08998 * 109.47003 * 66.27436 * 17 16 15 29 29 H 1.08993 * 109.46706 * 186.27831 * 17 16 15 30 30 H 1.09002 * 109.46742 * 306.27920 * 17 16 15 31 31 H 1.09002 * 109.47706 * 59.99916 * 18 16 15 32 32 H 1.08998 * 109.47125 * 180.02562 * 18 16 15 33 33 H 1.09001 * 109.46975 * 299.99782 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0924 0.0000 4 6 3.6339 0.6460 -0.0006 5 6 3.6090 -0.7023 -0.0004 6 6 4.8133 -1.6082 -0.0003 7 6 5.2897 -1.8105 1.4151 8 1 4.7718 -1.3313 2.2327 9 6 6.3866 -2.6072 1.6660 10 7 7.0168 -3.1911 0.6703 11 14 6.9766 -2.8586 3.4205 12 1 5.8919 -3.4779 4.2236 13 1 8.1641 -3.7501 3.4204 14 1 7.3432 -1.5467 4.0120 15 7 2.3062 -1.1046 0.0059 16 6 1.8420 -2.4941 0.0139 17 6 1.1303 -2.7865 1.3364 18 6 0.8705 -2.7138 -1.1475 19 1 -0.3634 0.0896 -1.0237 20 1 -0.3633 0.8419 0.5894 21 1 -0.3633 -0.9313 0.4344 22 1 1.9672 2.1206 -0.0004 23 1 4.5160 1.2690 -0.0011 24 1 4.5437 -2.5711 -0.4340 25 1 5.6095 -1.1541 -0.5903 26 1 7.7883 -3.7519 0.8469 27 1 2.6956 -3.1630 -0.0950 28 1 0.2153 -2.1971 1.3946 29 1 0.8836 -3.8468 1.3894 30 1 1.7852 -2.5237 2.1671 31 1 1.3774 -2.5055 -2.0898 32 1 0.5247 -3.7475 -1.1414 33 1 0.0168 -2.0449 -1.0387 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259480832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:56 Heat of formation + Delta-G solvation = 11.510948 kcal Electronic energy + Delta-G solvation = -13789.651633 eV Core-core repulsion = 11621.886728 eV Total energy + Delta-G solvation = -2167.764905 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 207.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.19098 -36.29093 -35.44700 -33.05370 -30.60973 -30.16341 -28.18305 -26.58139 -24.14525 -23.06479 -21.01534 -19.19169 -18.52904 -17.19753 -16.31087 -15.90000 -15.67179 -14.70422 -14.37612 -14.27166 -14.23106 -13.99323 -13.51134 -13.10512 -13.02788 -12.79945 -12.79078 -12.64486 -12.59611 -12.35018 -12.18756 -11.78923 -11.53220 -11.40481 -10.63325 -9.33518 -8.58487 -8.15378 -6.36051 1.35704 1.39513 1.46932 1.56850 2.21176 2.25328 2.41944 3.07475 3.74283 4.05675 4.08644 4.20046 4.37305 4.54140 4.64573 4.68913 4.75556 4.83702 4.87725 4.89727 4.98829 5.01755 5.18136 5.26293 5.27564 5.36028 5.57059 5.68213 5.77878 6.10801 6.39507 6.61387 6.73384 6.83148 7.32697 8.86141 Molecular weight = 207.13amu Principal moments of inertia in cm(-1) A = 0.036200 B = 0.009739 C = 0.008991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.297282 B = 2874.281041 C = 3113.402706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.001 4.001 3 C -0.221 4.221 4 C -0.241 4.241 5 C 0.033 3.967 6 C 0.092 3.908 7 C -0.525 4.525 8 H 0.047 0.953 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.271 1.271 15 N -0.437 5.437 16 C 0.115 3.885 17 C -0.154 4.154 18 C -0.156 4.156 19 H 0.082 0.918 20 H 0.087 0.913 21 H 0.078 0.922 22 H 0.147 0.853 23 H 0.115 0.885 24 H 0.003 0.997 25 H 0.008 0.992 26 H 0.267 0.733 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 1.419 -0.636 14.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C -0.246 4.246 4 C -0.265 4.265 5 C -0.080 4.080 6 C 0.055 3.945 7 C -0.563 4.563 8 H 0.065 0.935 9 C -0.190 4.190 10 N -0.568 5.568 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.196 1.196 15 N -0.114 5.114 16 C 0.013 3.987 17 C -0.212 4.212 18 C -0.213 4.213 19 H 0.101 0.899 20 H 0.106 0.894 21 H 0.096 0.904 22 H 0.165 0.835 23 H 0.133 0.867 24 H 0.021 0.979 25 H 0.026 0.974 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.639 0.940 -0.681 14.685 hybrid contribution 1.278 -0.103 0.660 1.442 sum -13.360 0.837 -0.021 13.386 Atomic orbital electron populations 1.20561 0.85583 1.03884 1.03443 1.20788 0.94927 0.85215 1.10214 1.20779 0.91938 0.98340 1.13506 1.20676 0.97805 0.93301 1.14689 1.20906 0.85587 0.95118 1.06369 1.17519 0.88697 0.91805 0.96498 1.21243 1.13149 1.29327 0.92594 0.93486 1.25881 0.96312 0.95087 1.01748 1.70060 1.21139 1.32416 1.33161 0.85514 0.77965 0.78350 0.79329 1.19227 1.20180 1.19595 1.44306 1.04651 1.06279 1.56145 1.21532 0.98473 0.80179 0.98514 1.22175 1.00543 1.03769 0.94674 1.22245 0.98921 1.04508 0.95657 0.89903 0.89382 0.90382 0.83501 0.86675 0.97911 0.97416 0.92441 0.91165 0.89768 0.88898 0.94575 0.93434 0.88591 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 8.57 71.24 0.61 -1.14 16 2 C 0.00 -0.02 6.42 41.08 0.26 0.24 16 3 C -0.22 -8.45 10.77 22.14 0.24 -8.21 16 4 C -0.24 -11.14 10.77 22.14 0.24 -10.90 16 5 C 0.03 1.60 6.08 41.08 0.25 1.85 16 6 C 0.09 5.23 5.16 29.10 0.15 5.38 16 7 C -0.52 -31.13 9.09 25.60 0.23 -30.90 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.01 0.47 5.46 84.65 0.46 0.93 16 10 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 11 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 N -0.44 -17.56 2.62 -473.34 -1.24 -18.80 16 16 C 0.11 3.88 3.35 44.99 0.15 4.03 16 17 C -0.15 -4.37 9.22 71.98 0.66 -3.71 16 18 C -0.16 -3.84 9.08 71.98 0.65 -3.18 16 19 H 0.08 1.57 7.98 -2.39 -0.02 1.55 16 20 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 21 H 0.08 1.54 4.32 -2.39 -0.01 1.53 16 22 H 0.15 4.67 8.06 -2.91 -0.02 4.64 16 23 H 0.12 5.32 8.06 -2.92 -0.02 5.30 16 24 H 0.00 0.16 6.80 -2.39 -0.02 0.14 16 25 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 27 H 0.07 2.84 6.50 -2.39 -0.02 2.82 16 28 H 0.08 1.94 5.63 -2.39 -0.01 1.92 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.09 1.77 5.10 -2.39 -0.01 1.76 16 Total: -1.00 -68.82 268.08 6.06 -62.76 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.08 Total: 10.66 kcal Atomic # 6 Polarization: -49.52 SS G_CDS: 3.91 Total: -45.61 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -0.95 Total: -74.97 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.82 6.06 -62.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259480832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.271 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds