Wall clock time and date at job start Mon Mar 30 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.30905 * 125.09146 * 89.99885 * 10 9 7 12 12 N 1.37479 * 116.32320 * 179.97438 * 11 10 9 13 13 C 1.38929 * 139.53795 * 179.97438 * 12 11 10 14 14 C 1.34343 * 107.12246 * 180.02562 * 13 12 11 15 15 N 1.33871 * 108.38837 * 0.02562 * 14 13 12 16 16 C 1.32359 * 109.13895 * 359.97438 * 15 14 13 17 17 S 1.75782 * 125.08819 * 269.69411 * 10 9 7 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08004 * 121.83841 * 359.97438 * 11 10 9 22 22 H 1.08001 * 126.43977 * 0.03282 * 13 12 11 23 23 H 1.07998 * 125.80108 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7192 -4.2167 1.0716 12 7 3.6017 -5.2498 0.8621 13 6 4.3700 -6.1482 1.5920 14 6 5.0267 -6.9169 0.7074 15 7 4.6898 -6.5226 -0.5268 16 6 3.8314 -5.5186 -0.4424 17 16 2.8810 -4.4177 -1.4378 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.4445 -3.8947 2.0653 22 1 4.4282 -6.2159 2.6683 23 1 5.7102 -7.7170 0.9506 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259560285.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:16 Heat of formation + Delta-G solvation = 86.422576 kcal Electronic energy + Delta-G solvation = -10819.958763 eV Core-core repulsion = 8761.103040 eV Total energy + Delta-G solvation = -2058.855723 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.12875 -36.38369 -33.42394 -31.08833 -29.42293 -26.96841 -23.85344 -22.74419 -20.97257 -19.35886 -17.90635 -16.57311 -15.49639 -15.31860 -14.79216 -14.16886 -13.91755 -13.04847 -12.60816 -12.32682 -11.62262 -11.32420 -10.95332 -10.86460 -10.45345 -10.14302 -9.95383 -9.87759 -9.53320 -8.61188 -8.25046 -7.24364 -6.24159 -4.30397 1.40734 1.53310 2.25009 2.75683 3.05883 3.20181 3.22731 3.27468 3.31082 4.29495 4.86304 5.11691 5.13625 5.44512 5.74137 6.00442 6.18648 6.50746 6.82440 7.16991 7.21918 7.30285 7.70219 7.99883 8.06031 8.73031 9.35498 10.85417 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.059483 B = 0.008112 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.607355 B = 3450.927839 C = 3523.183754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.900 3.100 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.085 3.915 10 C -0.106 4.106 11 C -0.013 4.013 12 N -0.392 5.392 13 C -0.068 4.068 14 C 0.005 3.995 15 N -0.475 5.475 16 C 0.128 3.872 17 S 0.170 5.830 18 H 0.266 0.734 19 H 0.049 0.951 20 H 0.043 0.957 21 H 0.177 0.823 22 H 0.176 0.824 23 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -7.869 2.402 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.046 3.954 10 C -0.225 4.225 11 C -0.138 4.138 12 N -0.069 5.069 13 C -0.202 4.202 14 C -0.146 4.146 15 N -0.199 5.199 16 C -0.238 4.238 17 S 0.419 5.581 18 H 0.076 0.924 19 H 0.067 0.933 20 H 0.061 0.939 21 H 0.195 0.805 22 H 0.193 0.807 23 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.569 -7.858 0.375 9.097 hybrid contribution 0.424 1.034 2.393 2.641 sum 4.993 -6.824 2.768 8.897 Atomic orbital electron populations 1.69922 1.06063 1.27491 1.49313 1.24983 0.94939 0.99429 0.94579 0.86510 0.79526 0.82279 0.78945 1.19897 1.21023 1.20057 1.20977 0.93232 0.89337 1.52791 0.92083 1.18018 0.90917 0.86799 0.99642 1.24815 1.03473 1.01715 0.92481 1.20222 0.98435 0.93086 1.02075 1.43873 1.31093 1.24182 1.07802 1.22673 1.02158 0.96721 0.98658 1.22262 1.02798 1.01870 0.87719 1.70532 1.13934 1.10934 1.24544 1.26488 1.06033 1.03697 0.87538 1.84817 1.41975 1.26408 1.04900 0.92388 0.93317 0.93933 0.80548 0.80725 0.80426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 13.29 55.43 0.74 -23.90 14 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 14 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 14 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 14 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 14 7 C -0.53 -13.68 9.09 -34.44 -0.31 -13.99 14 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 14 9 C 0.09 2.00 5.45 -29.03 -0.16 1.84 14 10 C -0.11 -2.16 5.61 -36.00 -0.20 -2.36 14 11 C -0.01 -0.24 11.11 -16.71 -0.19 -0.43 14 12 N -0.39 -7.19 3.19 -63.77 -0.20 -7.40 14 13 C -0.07 -1.03 12.04 -15.71 -0.19 -1.22 14 14 C 0.00 0.08 11.82 -18.04 -0.21 -0.14 14 15 N -0.48 -9.07 11.32 -13.55 -0.15 -9.23 14 16 C 0.13 2.51 8.93 -88.70 -0.79 1.72 14 17 S 0.17 3.22 23.35 -107.50 -2.51 0.71 14 18 H 0.27 7.00 8.31 -40.82 -0.34 6.66 14 19 H 0.05 1.17 8.14 -51.93 -0.42 0.74 14 20 H 0.04 1.04 8.14 -51.93 -0.42 0.62 14 21 H 0.18 2.91 8.06 -52.48 -0.42 2.49 14 22 H 0.18 1.96 8.06 -52.49 -0.42 1.53 14 23 H 0.18 1.99 8.06 -52.49 -0.42 1.56 14 LS Contribution 228.02 15.07 3.44 3.44 Total: -1.00 -29.14 228.02 -7.52 -36.66 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: -1.65 Total: -2.80 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.15 Total: -12.97 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.38 Total: -40.52 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.51 Total: 0.71 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -29.14 -7.52 -36.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259560285.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.086 kcal (2) G-P(sol) polarization free energy of solvation -29.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds