Wall clock time and date at job start Mon Mar 30 2020 02:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29983 * 126.18543 * 2 1 4 4 N 1.39583 * 109.83000 * 179.97438 * 3 2 1 5 5 H 0.96999 * 125.41724 * 179.97438 * 4 3 2 6 6 C 1.36596 * 109.15992 * 359.97438 * 4 3 2 7 7 S 1.75894 * 142.45026 * 179.97438 * 6 4 3 8 8 C 1.75555 * 91.66374 * 180.02562 * 7 6 4 9 9 C 1.39974 * 124.91344 * 180.02562 * 8 7 6 10 10 H 1.08000 * 119.99963 * 190.63598 * 9 8 7 11 11 C 1.40009 * 119.99988 * 10.63716 * 9 8 7 12 12 N 1.30906 * 120.00218 * 174.75837 * 11 9 8 13 13 Si 1.86807 * 120.00202 * 354.75731 * 11 9 8 14 14 H 1.48502 * 109.46964 * 180.02562 * 13 11 9 15 15 H 1.48500 * 109.46762 * 300.00002 * 13 11 9 16 16 H 1.48496 * 109.46851 * 60.00155 * 13 11 9 17 17 C 1.37091 * 110.17048 * 0.26784 * 8 7 6 18 18 C 1.38941 * 107.47540 * 0.02562 * 6 4 3 19 19 H 1.09006 * 109.47001 * 89.97227 * 1 2 3 20 20 H 1.08994 * 109.47484 * 209.97175 * 1 2 3 21 21 H 1.09004 * 109.47691 * 329.97432 * 1 2 3 22 22 H 0.97001 * 119.99532 * 359.81035 * 12 11 9 23 23 H 1.07995 * 122.62383 * 179.71701 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2744 1.0491 0.0000 4 7 3.6138 0.6560 0.0006 5 1 4.3757 1.2563 0.0004 6 6 3.6806 -0.7083 0.0015 7 16 4.8195 -2.0487 0.0023 8 6 3.5153 -3.2238 0.0026 9 6 3.6884 -4.6128 0.0037 10 1 2.8431 -5.2624 -0.1688 11 6 4.9574 -5.1599 0.2285 12 7 5.1021 -6.4568 0.3318 13 14 6.4441 -4.0392 0.3810 14 1 7.6601 -4.8590 0.6144 15 1 6.6066 -3.2591 -0.8721 16 1 6.2476 -3.1086 1.5214 17 6 2.3027 -2.5842 -0.0038 18 6 2.3773 -1.1899 0.0010 19 1 -0.3633 0.0005 -1.0277 20 1 -0.3634 -0.8902 0.5134 21 1 -0.3634 0.8897 0.5142 22 1 4.3297 -7.0386 0.2553 23 1 1.3634 -3.1170 -0.0093 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259576416.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:04 Heat of formation + Delta-G solvation = 44.530576 kcal Electronic energy + Delta-G solvation = -11035.888556 eV Core-core repulsion = 8975.216260 eV Total energy + Delta-G solvation = -2060.672296 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 208.037 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.46869 -36.89466 -34.96261 -33.46022 -30.69639 -28.70725 -26.22475 -23.46526 -21.31928 -20.26368 -20.18103 -19.04601 -16.74372 -16.14789 -15.85613 -15.63278 -14.60007 -14.36608 -14.01592 -13.83445 -13.44233 -13.39809 -12.89270 -12.30607 -11.97705 -11.85677 -11.53434 -11.45809 -10.71965 -10.43388 -9.49805 -9.24519 -8.54161 -6.44074 0.29062 0.66040 1.02368 1.19249 1.34739 1.46969 1.65416 2.17261 2.25062 2.39544 3.03617 3.94358 3.95104 4.43196 4.83282 4.92200 4.99054 5.20813 5.33683 5.46125 5.61645 5.80375 6.07874 6.25501 6.48291 6.64009 6.85052 7.89474 Molecular weight = 208.04amu Principal moments of inertia in cm(-1) A = 0.056425 B = 0.011863 C = 0.009877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.114640 B = 2359.802713 C = 2834.113138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.070 3.930 3 N -0.284 5.284 4 N -0.467 5.467 5 H 0.444 0.556 6 C -0.096 4.096 7 S 0.078 5.922 8 C 0.014 3.986 9 C -0.491 4.491 10 H 0.066 0.934 11 C 0.018 3.982 12 N -0.832 5.832 13 Si 0.926 3.074 14 H -0.198 1.198 15 H -0.181 1.181 16 H -0.183 1.183 17 C -0.315 4.315 18 C -0.154 4.154 19 H 0.088 0.912 20 H 0.079 0.921 21 H 0.089 0.911 22 H 0.281 0.719 23 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 8.528 -0.059 8.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 N -0.106 5.106 4 N -0.185 5.185 5 H 0.289 0.711 6 C -0.325 4.325 7 S 0.324 5.676 8 C -0.103 4.103 9 C -0.526 4.526 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.455 5.455 13 Si 0.744 3.256 14 H -0.120 1.120 15 H -0.107 1.107 16 H -0.108 1.108 17 C -0.342 4.342 18 C -0.170 4.170 19 H 0.107 0.893 20 H 0.098 0.902 21 H 0.108 0.892 22 H 0.092 0.908 23 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.462 9.577 0.193 10.185 hybrid contribution -3.034 -1.149 -0.323 3.261 sum 0.428 8.428 -0.130 8.439 Atomic orbital electron populations 1.20204 0.83792 1.03996 1.03875 1.23922 0.97740 0.87557 1.01191 1.76117 0.87451 1.23345 1.23686 1.44888 1.05511 1.01503 1.66607 0.71055 1.24753 1.00810 0.90194 1.16760 1.84185 1.06976 0.93713 1.82727 1.21279 0.93384 0.95733 0.99913 1.20019 0.97670 0.90594 1.44326 0.91624 1.28258 1.03323 0.98456 0.89782 1.70644 1.35832 1.04600 1.34435 0.84526 0.76957 0.78382 0.85724 1.11993 1.10738 1.10826 1.18974 0.96286 0.90704 1.28283 1.20007 0.91548 0.94029 1.11453 0.89345 0.90200 0.89189 0.90783 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.72 10.48 71.24 0.75 -0.97 14 2 C 0.07 2.79 7.48 45.25 0.34 3.13 14 3 N -0.28 -11.07 12.54 -42.77 -0.54 -11.61 14 4 N -0.47 -17.73 7.33 -52.60 -0.39 -18.12 14 5 H 0.44 13.26 8.96 -213.65 -1.92 11.35 14 6 C -0.10 -4.24 8.48 84.12 0.71 -3.53 14 7 S 0.08 3.42 15.32 -56.49 -0.87 2.55 14 8 C 0.01 0.74 5.96 22.42 0.13 0.88 14 9 C -0.49 -26.50 9.70 23.12 0.22 -26.27 14 10 H 0.07 3.75 8.06 -2.91 -0.02 3.73 14 11 C 0.02 0.91 5.52 85.26 0.47 1.38 14 12 N -0.83 -43.57 13.66 21.85 0.30 -43.27 14 13 Si 0.93 36.46 24.49 68.60 1.68 38.14 14 14 H -0.20 -7.13 7.11 99.48 0.71 -6.42 14 15 H -0.18 -6.53 6.31 97.17 0.61 -5.92 14 16 H -0.18 -6.77 6.34 97.71 0.62 -6.15 14 17 C -0.32 -15.89 10.20 22.34 0.23 -15.66 14 18 C -0.15 -7.19 6.76 -20.35 -0.14 -7.33 14 19 H 0.09 2.23 8.14 -2.38 -0.02 2.21 14 20 H 0.08 2.21 8.14 -2.39 -0.02 2.19 14 21 H 0.09 2.14 8.14 -2.39 -0.02 2.13 14 22 H 0.28 14.65 8.72 -92.71 -0.81 13.84 14 23 H 0.11 5.23 8.06 -2.91 -0.02 5.21 14 Total: -1.00 -60.54 215.92 2.02 -58.52 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.89 Total: 22.16 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 2.72 Total: -48.37 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -0.62 Total: -73.01 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 1.68 Total: 38.14 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -0.87 Total: 2.55 kcal Total: -60.54 2.02 -58.52 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259576416.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.052 kcal (2) G-P(sol) polarization free energy of solvation -60.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds